- Author:
- keeran97 <85910337+keeran97@users.noreply.github.com>
- Date:
- 2021-08-24 13:34:34+12:00
- Desc:
- add Y4Q4 version of pig bladder scaffold
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/6e5/rawfile/08b9059ca963f240f5a5389465cf1863d8e37c56/pigBladderSettings.json
{
"generator_settings": {
"deleteElementRanges": "",
"displayAxes": true,
"displayElementAxes": false,
"displayElementNumbers": false,
"displayLines": true,
"displayLinesExterior": false,
"displayMarkerPoints": false,
"displayModelRadius": false,
"displayNodeDerivativeLabels": [
"D1",
"D2",
"D3"
],
"displayNodeDerivatives": 0,
"displayNodeNumbers": false,
"displayNodePoints": false,
"displaySurfaces": true,
"displaySurfacesExterior": true,
"displaySurfacesTranslucent": true,
"displaySurfacesWireframe": false,
"modelCoordinatesField": "coordinates",
"scaffoldPackage": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Central path LUT": {
"_ScaffoldPackage": true,
"meshEdits": "EX Version: 2\n Group name: meshEdits\n!#nodeset nodes\nShape. Dimension=0\n#Fields=1\n1) coordinates, coordinate, rectangular cartesian, real, #Components=3\n x. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n y. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\n z. #Values=4 (value,d/ds1,d/ds2,d2/ds1ds2)\nNode: 1\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 0.000000000000000e+00 3.967000000000000e-01 4.999000000000000e-01 2.000000000000000e-04\n 0.000000000000000e+00 1.711800000000000e+01 -1.160000000000000e-02 8.399999999999999e-03\nNode: 2\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 2.526000000000000e-01 1.084000000000000e-01 5.000000000000000e-01 1.000000000000000e-04\n 1.648200000000000e+01 1.584400000000000e+01 -3.400000000000000e-03 7.300000000000000e-03\nNode: 3\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 2.277000000000000e-01 -1.005000000000000e-01 5.000000000000000e-01 1.800000000000000e-02\n 3.168700000000000e+01 1.625000000000000e+01 3.100000000000000e-03 3.000000000000000e-03\nNode: 4\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 4.210000000000000e-02 -1.616000000000000e-01 5.385000000000000e-01 1.620000000000000e-02\n 4.898200000000000e+01 1.763900000000000e+01 4.900000000000000e-03 4.060000000000000e-02\nNode: 5\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n -9.450000000000000e-02 -4.986000000000000e-01 5.377999999999999e-01 -5.100000000000000e-03\n 6.696500000000000e+01 1.798700000000000e+01 2.760000000000000e-02 5.090000000000000e-02\nNode: 6\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n -9.552000000000000e-01 -6.462000000000000e-01 5.374000000000000e-01 -1.730000000000000e-02\n 8.494600000000000e+01 1.873400000000000e+01 3.340000000000000e-02 -7.180000000000000e-02\nNode: 7\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n -1.366900000000000e+00 5.462000000000000e-01 4.994000000000000e-01 -2.660000000000000e-02\n 1.044200000000000e+02 1.711800000000000e+01 -2.330000000000000e-02 -1.269000000000000e-01\nNode: 8\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n -1.150000000000000e-01 2.766300000000000e+00 4.902000000000000e-01 -1.160000000000000e-02\n 1.191200000000000e+02 1.406800000000000e+01 -9.800000000000000e-02 -4.900000000000000e-02\nNode: 9\n 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00 0.000000000000000e+00\n 4.032100000000000e+00 5.480200000000000e+00 4.691000000000000e-01 8.000000000000000e-03\n 1.323700000000000e+02 1.231500000000000e+01 -1.728000000000000e-01 3.820000000000000e-02\n",
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Coordinate dimensions": 3,
"D2 derivatives": true,
"D3 derivatives": false,
"Length": 1.0,
"Number of elements": 8
},
"scaffoldTypeName": "1D Path 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
],
"userAnnotationGroups": [
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "1-4",
"name": "urinary bladder",
"ontId": "UBERON:0001255"
},
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "5-8",
"name": "urethra",
"ontId": "UBERON:0000057"
}
]
},
"Include ureter": false,
"Include urethra": true,
"Major diameter": 30.0,
"Minor diameter": 25.0,
"Neck angle degrees": 45,
"Neck diameter 1": 6.0,
"Neck diameter 2": 5.5,
"Number of elements along bladder": 8,
"Number of elements along urethra": 6,
"Number of elements around": 12,
"Number of elements through wall": 1,
"Number of elements ureter radial": 2,
"Refine": false,
"Refine number of elements along": 4,
"Refine number of elements around": 4,
"Refine number of elements through wall": 1,
"Ureter": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Number of elements across common": 2,
"Number of elements along": 1,
"Number of elements around ostium": 8,
"Number of elements through wall": 1,
"Number of vessels": 1,
"Ostium diameter": 2.0,
"Ostium inter-vessel distance": 0.8,
"Ostium inter-vessel height": 0.0,
"Ostium length": 0.2,
"Ostium wall thickness": 0.5,
"Outlet": false,
"Refine": false,
"Refine number of elements along": 4,
"Refine number of elements around": 4,
"Refine number of elements through wall": 1,
"Unit scale": 1.0,
"Use cross derivatives": false,
"Use linear through ostium wall": true,
"Use linear through vessel wall": true,
"Vessel angle 1 degrees": 0.0,
"Vessel angle 1 spread degrees": 0.0,
"Vessel angle 2 degrees": 0.0,
"Vessel end length factor": 2.0,
"Vessel inner diameter": 0.9,
"Vessel wall thickness": 0.2
},
"scaffoldTypeName": "3D Ostium 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
},
"Ureter position around": 0.67,
"Ureter position down": 0.865,
"Urethra diameter 1": 1.25,
"Urethra diameter 2": 1.0,
"Urethra wall thickness": 0.25,
"Use cross derivatives": false,
"Use linear through wall": true,
"Wall thickness": 0.5
},
"scaffoldTypeName": "3D Bladder with Urethra 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
}
},
"segmentation_data_settings": {
"displayDataContours": true,
"displayDataMarkerNames": true,
"displayDataMarkerPoints": true,
"displayDataPoints": false,
"displayDataRadius": false
}
}
