https://staging.physiomeproject.org/workspace/6f9 en-us BG Gi activation module based on Iancu et al 2007. Gi is downstream of muscarinic M2 receptor activation https://staging.physiomeproject.org/workspace/6f9/@@file/79d1d59c67451485a38e1a013e70db6a2348f40f including GTP and GDP again Shelley Fong 2021-11-26 https://staging.physiomeproject.org/workspace/6f9/@@file/030b1a94a8690adc6d4a9f47a0db2ecdf0635d09 Updating Knames Shelley Fong 2021-11-26 https://staging.physiomeproject.org/workspace/6f9/@@file/df183a1b55c67436e9a30db3a32568f3dd8d850a Using sympy for rational nullspace Shelley Fong 2021-11-17 https://staging.physiomeproject.org/workspace/6f9/@@file/891a09910aadd52ffe0676a1350ed8e44bf41597 Finding rational nullspace Shelley Fong 2021-11-16 https://staging.physiomeproject.org/workspace/6f9/@@file/5695e86c86788d8e1aaeebf44636577418f57b7b Automating more Shelley Fong 2021-11-02 https://staging.physiomeproject.org/workspace/6f9/@@file/340bebd6437a5bb746e5c5103f007fe3f7d0fed6 Renaming kinetic_parameters.py Shelley Fong 2021-10-28 https://staging.physiomeproject.org/workspace/6f9/@@file/86e631333ddd9ac87dab56de14cdd88c4e12bc27 Adding new parameter files with GEF intermediate Shelley Fong 2021-10-27 https://staging.physiomeproject.org/workspace/6f9/@@file/94432e1fcbbda2c3e5e4a28e53785a563ee03c3d Removing legacy excel file Shelley Fong 2021-10-27 https://staging.physiomeproject.org/workspace/6f9/@@file/59418dd88bfc08e0fb49d6d280ed9e7b87fc7616 Adding intermediate compound in GEF reaction scheme Shelley Fong 2021-10-26 https://staging.physiomeproject.org/workspace/6f9/@@file/076a97458d5b1be8a65ad194e3b19ff6a3adbcfb Fixing bugs Shelley Fong 2021-10-22 https://staging.physiomeproject.org/workspace/6f9/@@file/266e0c4f2350878d3808446fc1e978db3dd0c9e7 Updating equations to reflect GEF action and remove wrong phosphate bindings Shelley Fong 2021-10-22 https://staging.physiomeproject.org/workspace/6f9/@@file/18902e0e030cc3cfc9cfb2bc73311fbdee38d319 Removing MATLAB files Shelley Fong 2021-10-20 https://staging.physiomeproject.org/workspace/6f9/@@file/a58226f25c650ce4a2f99714dee1b2c92e15fd22 Adding remaining python files or modifications Shelley Fong 2021-10-20 https://staging.physiomeproject.org/workspace/6f9/@@file/61b3e5c0d81543f7e3ecf620a0529a5f1cbea420 Renaming folder Shelley Fong 2021-10-19 https://staging.physiomeproject.org/workspace/6f9/@@file/7d5f4e1205d09b6f95ccae76a1f87f435ded812b Adding ODEs for RGP and LRGP Shelley Fong 2021-10-15 https://staging.physiomeproject.org/workspace/6f9/@@file/4d59187ed3566843e9873a681343849152d772be Updating contraints Shelley Fong 2021-10-14 https://staging.physiomeproject.org/workspace/6f9/@@file/73f77f1c8f71a032ea294a93cbc981647d3e35ce Including phosphate binding RG and LRG as a separate reaction. Updating stoichiometry and including 2 new reactions and 2 new chemical species as a result Shelley Fong 2021-10-14 https://staging.physiomeproject.org/workspace/6f9/@@file/360633cc401e9dbf6a2b3ed974fcff71a045765f swapping G for RG and LRG as substrates for act1 and act2 reactions Shelley Fong 2021-10-13 https://staging.physiomeproject.org/workspace/6f9/@@file/f0a187c0a8fa90941aad6a678b18971d0e1e7576 Adding ODE for Pi Shelley Fong 2021-10-12 https://staging.physiomeproject.org/workspace/6f9/@@file/aa1b53bfa40297b94844d36391ba516cc4ecb2d5 Adding conservation of chemostat mass check in environment. Fixing ICs to have negligible enzyme complexes Shelley Fong 2021-10-11 https://staging.physiomeproject.org/workspace/6f9/@@file/80f3a851cec1c487b4d2e024b519e218b31b42fc adding mu_Pi to reaction velocities Shelley Fong 2021-10-04 https://staging.physiomeproject.org/workspace/6f9/@@file/2f1d13c180d622fc2c427a257ebfb799060e6649 Adding phosphate group Shelley Fong 2021-10-04 https://staging.physiomeproject.org/workspace/6f9/@@file/00f2b0a28859219622228732aa07b2381c90c948 Updating reaction equations with new stoichiometry for Act reaction Shelley Fong 2021-10-01 https://staging.physiomeproject.org/workspace/6f9/@@file/ab7f3673846e566bc1b94ddbdf77ff3e27dfef1d Separate G from R in stoichiometry Shelley Fong 2021-10-01 https://staging.physiomeproject.org/workspace/6f9/@@file/5704e79fcfc9373ddbb64a6d4e95e14d3e5aae60 Updating closed loops in G protein metabolism Shelley Fong 2021-09-28 https://staging.physiomeproject.org/workspace/6f9/@@file/cb970798474a6b1ab385c3bb36607c7201bba2b5 Changing initial conditions Shelley Fong 2021-09-20 https://staging.physiomeproject.org/workspace/6f9/@@file/2272cbf476f812b61cd9921817236421df2115f4 Using common PMR repo for units_and_constants Shelley Fong 2021-09-17 https://staging.physiomeproject.org/workspace/6f9/@@file/6cfa6d73c5fcff0ae15cbb4ad6b09d9d5c0e53f3 renaming parameters and updating matlab file Shelley Fong 2021-09-17 https://staging.physiomeproject.org/workspace/6f9/@@file/c4c1635850a0cc9b10bde53c22034e1a950b1686 Changing names of parameters Shelley Fong 2021-09-16 https://staging.physiomeproject.org/workspace/6f9/@@file/2f73520c8f4936be8a3f5b6e9425fe6042245549 Readding files Shelley Fong 2021-09-09 https://staging.physiomeproject.org/workspace/6f9/@@file/36983f654a3067b15590fe23a39ef4183c9b69b5 Cleaning Shelley Fong 2021-09-09 https://staging.physiomeproject.org/workspace/6f9/@@file/d744af05071d63c4b5058226ec6895315c07cc67 Adding LRGbinding submodule again Shelley Fong 2021-09-09 https://staging.physiomeproject.org/workspace/6f9/@@file/81705d2a29c8a02e54d01e448f1fb9c6f99187f3 Removing empty folder Shelley Fong 2021-09-09 https://staging.physiomeproject.org/workspace/6f9/@@file/3fb623cc0dea62e4d9076fb7e36fc6c0cf631527 Adding LRGbinding submodule Shelley Fong 2021-09-09 https://staging.physiomeproject.org/workspace/6f9/@@file/7496746bc5249a942380061492411bf3863508f2 Adding GiProtein submodule Shelley Fong 2021-09-09 https://staging.physiomeproject.org/workspace/6f9/@@file/dac1130e6c2db073b746bae24413a987b6075ac9 deleting Shelley Fong 2021-09-09 https://staging.physiomeproject.org/workspace/6f9/@@file/3bf0e256b2b877c24a609eb20e9057b7c4fd6c80 adding Pub: out Shelley Fong 2021-09-07 https://staging.physiomeproject.org/workspace/6f9/@@file/512c34829562bacfe7aef89256e553b33732ac76 Fixing pub: out Shelley Fong 2021-09-07 https://staging.physiomeproject.org/workspace/6f9/@@file/83e6482b04bce2113b5223ea7176e404a1412559 Fixing stoich matrix and exporting all variables form module to global environment in cellml Shelley Fong 2021-09-06 https://staging.physiomeproject.org/workspace/6f9/@@file/2f78112063a2b9328b52e70a7b2384fc3d014d71 Rename Gs to Gi Shelley Fong 2021-09-06 https://staging.physiomeproject.org/workspace/6f9/@@file/2cec85dbec92111db7b92e57407c836f1400fabc Bug fixes Shelley Fong 2021-09-06 https://staging.physiomeproject.org/workspace/6f9/@@file/cd4228e81ba63d67888a7188ca4821998cb4510c Fixing ODEs; finding BG parameters Shelley Fong 2021-09-02 https://staging.physiomeproject.org/workspace/6f9/@@file/49f98f0dd2d4bea43ed5cdc9614e22ef2a0a42c8 Renaming 'GPCR' to 'GsProtein' as the former name is wrong Shelley Fong 2021-08-31 https://staging.physiomeproject.org/workspace/6f9/@@file/323b8195f980ce2bb1432dc0532a7a9d1245a359 Tidying up files Shelley Fong 2021-08-30 https://staging.physiomeproject.org/workspace/6f9/@@file/a49a5c3db55972ea84a81b002f53b21f4739e28e Adding volume arguments and changing dimensions of input kinetic parameters to uM (source literature) Shelley Fong 2021-08-25 https://staging.physiomeproject.org/workspace/6f9/@@file/411ca84a409a6547ea7c04403233d45e96e0f152 Rename file; use constants_BG.cellml import Shelley Fong 2021-07-26 https://staging.physiomeproject.org/workspace/6f9/@@file/5c1390117dceaede46debd5f51af280f5bf5887a Consolidating imports of units and constants Shelley Fong 2021-07-26 https://staging.physiomeproject.org/workspace/6f9/@@file/579c3eafb150c243ed14e5abd3dde53932a1fee4 Removing unnecessary file Shelley Fong 2021-07-26 https://staging.physiomeproject.org/workspace/6f9/@@file/388451396a719f4944f3bdbc3b121ce2855589df Adding MATLAB script to call function to find kinetic parameters. One for each module. Shelley Fong 2021-07-26 https://staging.physiomeproject.org/workspace/6f9/@@file/9b5f31178365f22c5a7e7c2f23cfbc64e674048f Initial commit Shelley Fong 2021-07-22