https://staging.physiomeproject.org/workspace/701 en-us Model of excitation-contraction in uterine myocytes from a pregnant rat This workspace encodes the model of excitation-contraction in uterine myocytes from a pregnant rat (Testrow et al 2018) Add readme to link the documentation on overleaf. https://staging.physiomeproject.org/workspace/701/@@file/6741283829975cd4f084159e7734dcbece29f7b1 Add readme to link the documentation on overleaf. WeiweiAi 2022-10-19 Add curve of force production https://staging.physiomeproject.org/workspace/701/@@file/8be7a4922bb718d1ce0ee92ce95460035f8b7237 Add curve of force production WeiweiAi 2022-01-27 wholeCell https://staging.physiomeproject.org/workspace/701/@@file/94a7b120ab1b692d753de772f9ed81e297a577ab wholeCell 0: base model, dynamic Nai, Ki and Cli 1: C++, dynamic Nai, Ki and Cli 2: base model, constant Nai, Ki and Cli 3: C++, constant Nai, Ki and Cli WeiweiAi 2022-01-25 0: IndividualCurrents_0.cellml+default_values.cellml; https://staging.physiomeproject.org/workspace/701/@@file/6b96dc522c518f7db26dd8ccbb3486ead6b881f8 0: IndividualCurrents_0.cellml+default_values.cellml; 1: IndividualCurrents_0.cellml+default_values_1.cellml; 2: IndividualCurrents.cellml+default_values.cellml; 3: IndividualCurrents.cellml+default_values_1.cellml WeiweiAi 2022-01-24 0: IndividualCurrents_0.cellml+default_values.cellml; https://staging.physiomeproject.org/workspace/701/@@file/fd3b8fd075bf7875754e3bc55661af926e095657 0: IndividualCurrents_0.cellml+default_values.cellml; 1: IndividualCurrents_0.cellml+default_values_1.cellml; 2: IndividualCurrents.cellml+default_values.cellml; 3: IndividualCurrents.cellml+default_values_1.cellml WeiweiAi 2022-01-24 _0.cellml uses the formulation in the base model https://staging.physiomeproject.org/workspace/701/@@file/f1f65ed3c88efd69a14d5abf04b8e12fa227e920 _0.cellml uses the formulation in the base model WeiweiAi 2022-01-24 Change the clamp para to the initial values given in C++ code https://staging.physiomeproject.org/workspace/701/@@file/023d243d73a20cf36c4e8fcb7c69d88cb1d1e2fe Change the clamp para to the initial values given in C++ code WeiweiAi 2022-01-20 fixed the mapping between wholeCell and IKCa https://staging.physiomeproject.org/workspace/701/@@file/2717542cdda3d6a8827cc36443c1b531d9fde3cf fixed the mapping between wholeCell and IKCa WeiweiAi 2022-01-20 default_values: mainly based on the tables in the supplemental materials and the reference models; https://staging.physiomeproject.org/workspace/701/@@file/7afee1334e192bf81c86d8eec8a86bfcf1985753 default_values: mainly based on the tables in the supplemental materials and the reference models; default_values_1: C++ code WeiweiAi 2022-01-20 revert the scaling in the currents https://staging.physiomeproject.org/workspace/701/@@file/1451a14f3fbe8fd7aacd0d0a73d87cec591b26de revert the scaling in the currents WeiweiAi 2022-01-20 Modify individualCurrents mapping, experiments etc. https://staging.physiomeproject.org/workspace/701/@@file/87a224d7e879b3a8cb8f9cb56966ab88907dabc6 Modify individualCurrents mapping, experiments etc. AP can fire but the frequency is not right WeiweiAi 2021-11-30 Modify units https://staging.physiomeproject.org/workspace/701/@@file/a72284921d127250143e97c4e3d1d29ca6c8dffc Modify units WeiweiAi 2021-11-29 Modify based on cpp code https://staging.physiomeproject.org/workspace/701/@@file/8893ecebef1ea9d9262411522e37f430a197761b Modify based on cpp code WeiweiAi 2021-11-29 Modify based on the cpp code https://staging.physiomeproject.org/workspace/701/@@file/79f0c4d19556b01218fa39776ebf57b4d8f5d81b Modify based on the cpp code WeiweiAi 2021-11-25 Modify based on original cpp code from the authors https://staging.physiomeproject.org/workspace/701/@@file/a7f87b4564e57ad0e84f53e82f5f6806f7875e1b Modify based on original cpp code from the authors WeiweiAi 2021-11-24 correction based on cross checking https://staging.physiomeproject.org/workspace/701/@@file/51ff74a5d6cec74225547f776376085466bd2985 correction based on cross checking WeiweiAi 2021-10-18 Correct the forceProduction to fix the underconstrained error. https://staging.physiomeproject.org/workspace/701/@@file/918e348bed45c4d2ab4f2686ec87cb9aebf876ce Correct the forceProduction to fix the underconstrained error. Add unit conversion test models WeiweiAi 2021-10-14 Romove conversion in CB4HM_Cai; https://staging.physiomeproject.org/workspace/701/@@file/9dd62c857bf571439c205a7c26c18b73346ca2e5 Romove conversion in CB4HM_Cai; Add whole cell model; Add python scripts; WeiweiAi 2021-10-13 tau_c2, -43.51 https://staging.physiomeproject.org/workspace/701/@@file/2d7e017458c9fc2a88c57c45589fffc65de69a9a tau_c2, -43.51 WeiweiAi 2021-10-12 Revert ICaT_gating to Tong 2011; I_K1, -V+7.7 in qinf; https://staging.physiomeproject.org/workspace/701/@@file/3a34f2fe0e1b6f676409d4cfa1c6726b71b1961e Revert ICaT_gating to Tong 2011; I_K1, -V+7.7 in qinf; Add gating variables in individualCurrents WeiweiAi 2021-10-11 expose the steady states and time constants of gating variables for validation https://staging.physiomeproject.org/workspace/701/@@file/3e34bdeaadb951fff681d9fc6104b9b166df3e12 expose the steady states and time constants of gating variables for validation WeiweiAi 2021-10-07 correct the Na gating equations https://staging.physiomeproject.org/workspace/701/@@file/2204bc44c758b5ee5a2ea0fc8cec10092aebb701 correct the Na gating equations WeiweiAi 2021-10-05 Add sedml file for clamp exp; https://staging.physiomeproject.org/workspace/701/@@file/b8d84123c1e3c145c46ffc1ed93c2afed70d5e20 Add sedml file for clamp exp; add original data; WeiweiAi 2021-10-04 correct the interface def and add individual currents for clamp experiment https://staging.physiomeproject.org/workspace/701/@@file/f5b5a6cc798b55f4a6f6a30cc839d5698a5a598c correct the interface def and add individual currents for clamp experiment WeiweiAi 2021-09-29 import units https://staging.physiomeproject.org/workspace/701/@@file/8c508656d91baad4c6184a8513e475266a71d5a3 import units WeiweiAi 2021-09-29 add CB4HM_Cai https://staging.physiomeproject.org/workspace/701/@@file/fc955f944a555bf8c64a88ab136430dec8f1383e add CB4HM_Cai WeiweiAi 2021-09-21 Make corrections https://staging.physiomeproject.org/workspace/701/@@file/0cf50db3389dffbd0a5b6294a4a2da66ec917002 Make corrections WeiweiAi 2021-09-21 make corrections https://staging.physiomeproject.org/workspace/701/@@file/e3299c4ef0224ce929bc24eb17a572310ff22f18 make corrections WeiweiAi 2021-09-20 Add force production model https://staging.physiomeproject.org/workspace/701/@@file/50fdea0691196b799e3118db8deb0dde9928b409 Add force production model WeiweiAi 2021-09-16 Add Sarcoplasmic reticulum currents and concentrations https://staging.physiomeproject.org/workspace/701/@@file/8b669f33d12e9ecafd0e0ada182e2bbc9e8b20ab Add Sarcoplasmic reticulum currents and concentrations WeiweiAi 2021-09-15 Move the Xi to cellLib and modify the import links https://staging.physiomeproject.org/workspace/701/@@file/159a045d5c67433414d4ab91a92baaa5ba810d37 Move the Xi to cellLib and modify the import links WeiweiAi 2021-09-15 Add intracellular concentrations https://staging.physiomeproject.org/workspace/701/@@file/5eb92ff17b0b2907de48a0950e613845781bf4e9 Add intracellular concentrations WeiweiAi 2021-09-15 Add NS currents https://staging.physiomeproject.org/workspace/701/@@file/1e8a68c9f92122aab2a28b05b34afe5aac611fdf Add NS currents WeiweiAi 2021-09-14 Add more currents https://staging.physiomeproject.org/workspace/701/@@file/c582aa8cf340b538cdb9d0568f9f81bb88be4d42 Add more currents WeiweiAi 2021-09-14 Add more currents https://staging.physiomeproject.org/workspace/701/@@file/2bf5b7e5a2169502881103b40deca4690a1a140a Add more currents WeiweiAi 2021-09-14 Add more currents. https://staging.physiomeproject.org/workspace/701/@@file/c29d6f84b7c0e51cd048048ac6e758b83f6775d0 Add more currents. WeiweiAi 2021-09-08 Add transformers to handle the unit conversion. https://staging.physiomeproject.org/workspace/701/@@file/9dd7336b8b5e1df205f5e3cf27707769b8eeb2f1 Add transformers to handle the unit conversion. WeiweiAi 2021-09-08 Add gatings and partial currents https://staging.physiomeproject.org/workspace/701/@@file/561d2b7d72cede10bc822b6b8c974e3927abb9b1 Add gatings and partial currents WeiweiAi 2021-09-07 Add cellLib https://staging.physiomeproject.org/workspace/701/@@file/354c2ee008f046289bf06f76cfe80d622dd85eae Add cellLib WeiweiAi 2021-09-07 Add ICaT.cellml https://staging.physiomeproject.org/workspace/701/@@file/333aba2c72fcb7066bc3ee3d40c00195bf99813d Add ICaT.cellml WeiweiAi 2021-09-07