- Author:
- WeiweiAi <wai484@aucklanduni.ac.nz>
- Date:
- 2021-10-14 09:48:20+13:00
- Desc:
- Correct the forceProduction to fix the underconstrained error.
Add unit conversion test models
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/701/rawfile/918e348bed45c4d2ab4f2686ec87cb9aebf876ce/Simulation/src/Figs_sim.py
# To reproduce the data needed for IV curve in clamping experiments in associated original paper
import clampExp
import imp
imp.reload(clampExp)
'''
simFign='FigA1F'
V_clamp=[-60, 120, 120, -50, 50, 10]
paraKeys=['Clamp_parameters/Cai']
paras=[11.6e-5]
outKeys=['outputs/I_CaL']
clampExp.clampExp(simFign, V_clamp,paraKeys,paras,outKeys)
simFign='FigA2F'
V_clamp=[-80, 100, 100, -70, 50, 10]
paraKeys=['Clamp_parameters/Cai']
paras=[11.6e-5]
outKeys=['outputs/I_CaT']
clampExp.clampExp(simFign, V_clamp,paraKeys,paras,outKeys)
simFign='FigA3F'
V_clamp=[-90, 50, 50, -50, 50, 10]
paraKeys=['Clamp_parameters/Nai']
paras=[4]
outKeys=['outputs/I_Na']
clampExp.clampExp(simFign, V_clamp,paraKeys,paras,outKeys)
simFign='FigA4F'
V_clamp=[-80, 8000, 8000, -60, 60, 10]
paraKeys=['Clamp_parameters/Ki']
paras=[110]
outKeys=['outputs/I_K1']
clampExp.clampExp(simFign, V_clamp,paraKeys,paras,outKeys)
simFign='FigA5F'
V_clamp=[-80, 8000, 8000, -60, 60, 10]
paraKeys=['Clamp_parameters/Ki']
paras=[140]
outKeys=['outputs/I_K2']
clampExp.clampExp(simFign, V_clamp,paraKeys,paras,outKeys)
simFign='FigA6F'
V_clamp=[-80, 150, 150, -80, 60, 10]
paraKeys=['Clamp_parameters/Ki']
paras=[140]
outKeys=['outputs/I_KA']
clampExp.clampExp(simFign, V_clamp,paraKeys,paras,outKeys)
simFign='FigA7D'
V_clamp=[-10, 3000, 3000, -20, -130, -10]
paraKeys=['Clamp_parameters/Nai','Clamp_parameters/Ki']
paras=[4,140]
outKeys=['outputs/I_h']
clampExp.clampExp(simFign, V_clamp,paraKeys,paras,outKeys)
'''
simFign='FigA8E'
V_clamp=[0, 100, 100, -60, 40, 10]
paraKeys=['Clamp_parameters/Cai']
paras=[11.6e-5]
outKeys=['outputs/I_Cl']
clampExp.clampExp(simFign, V_clamp,paraKeys,paras,outKeys)
