https://staging.physiomeproject.org/workspace/7a5 en-us BG_SERCA SERCA model adapted from Pan et al https://arxiv.org/abs/1806.04341 A copy of parameter finding code is made (in python) to allow for combining this module into a greater composite model, and to allow for different volume arguments affecting the Boltzmann parameters. Adding source to picture https://staging.physiomeproject.org/workspace/7a5/@@file/46c17cdd44aa536551b273635d2aea53789baabc Adding source to picture Shelley Fong 2024-12-09 Making diagram align with Pan/Tran https://staging.physiomeproject.org/workspace/7a5/@@file/ac0c6e0c26802e3470df420d99ebc290f984f3ab Making diagram align with Pan/Tran Shelley Fong 2024-12-09 Adding svg https://staging.physiomeproject.org/workspace/7a5/@@file/4b4ba913b306be946f787e9a676bbf2dbfb73c83 Adding svg Shelley Fong 2024-11-29 Adding exposure files https://staging.physiomeproject.org/workspace/7a5/@@file/3942f0e7b234f667c74869035f4c2651ad4edc7b Adding exposure files Shelley Fong 2024-11-08 Adding exposure files https://staging.physiomeproject.org/workspace/7a5/@@file/395abfdffdb3d294e872efbf3b48300332aa09d2 Adding exposure files Shelley Fong 2024-11-08 Changing name of H to H_i https://staging.physiomeproject.org/workspace/7a5/@@file/cfaacf4a8457c3868a732b1aa84231f1f28e34c3 Changing name of H to H_i Shelley Fong 2022-07-14 Fixing stoich for PLBp https://staging.physiomeproject.org/workspace/7a5/@@file/c9092e03c947ae410a4cf41bdfcf416f764ceb67 Fixing stoich for PLBp Shelley Fong 2022-06-14 Use mu_PLBp_effective (considers baseline) instead of mu_PLBp directly https://staging.physiomeproject.org/workspace/7a5/@@file/cf7b51a02dd2ca53497de991ff0aab5b2d661a8d Use mu_PLBp_effective (considers baseline) instead of mu_PLBp directly Shelley Fong 2022-06-14 Remove ode for PLBp https://staging.physiomeproject.org/workspace/7a5/@@file/cb15cf31e1d102465980cbe0db1630f304763936 Remove ode for PLBp Shelley Fong 2022-06-14 main SERCA version includes PLBp https://staging.physiomeproject.org/workspace/7a5/@@file/e15fde18f2d583c7c8eb14812dd1301077d49020 main SERCA version includes PLBp Shelley Fong 2022-06-14 Adding odes for gates https://staging.physiomeproject.org/workspace/7a5/@@file/9d5e55d62fe4dc048db9e1d7420c76ecdb6ba940 Adding odes for gates Shelley Fong 2022-06-13 Rename file https://staging.physiomeproject.org/workspace/7a5/@@file/4c6a5187a8377dcc5e19824f34b5dc507baa5653 Rename file Shelley Fong 2022-04-28 Map gate mol from env https://staging.physiomeproject.org/workspace/7a5/@@file/8a7a7f76a94e7d3492879d6a473ea0b5618837f6 Map gate mol from env Shelley Fong 2022-04-28 Various formatting changes https://staging.physiomeproject.org/workspace/7a5/@@file/005f5814d59a0ccd3d2a3366ab4a7acd5dc0c8e6 Various formatting changes Shelley Fong 2022-03-08 Renaming fluxes https://staging.physiomeproject.org/workspace/7a5/@@file/adb1c1c8c39a31036355c743d7341b669d33d2e1 Renaming fluxes Shelley Fong 2022-03-07 P to Pi name https://staging.physiomeproject.org/workspace/7a5/@@file/97b453c6f8f9dc0e2546f857fe34f9afc97e1128 P to Pi name Shelley Fong 2022-03-03 Cai to Ca_i https://staging.physiomeproject.org/workspace/7a5/@@file/e2c2240c90c4a37ea824cc1e13da68f5c418534a Cai to Ca_i Shelley Fong 2022-03-03 Changing Xi to X_i, and adding python param finder code https://staging.physiomeproject.org/workspace/7a5/@@file/d0e218d44b83767da39c597d98686d529f9da1c8 Changing Xi to X_i, and adding python param finder code Shelley Fong 2022-03-03 Updating way cellml is written https://staging.physiomeproject.org/workspace/7a5/@@file/e9402270ef6be6be0f5babe01a56a9d3240279b1 Updating way cellml is written Shelley Fong 2022-02-18 Output q_SERCA_Ca_complexes v3 https://staging.physiomeproject.org/workspace/7a5/@@file/fdfc4bee542264e928a956e943603f51484e08fa Output q_SERCA_Ca_complexes v3 Shelley Fong 2021-11-08 Output q_SERCA_Ca_complexes v2 https://staging.physiomeproject.org/workspace/7a5/@@file/2e915afddb2c66d6e4439dc1c7e567d77da0c6d7 Output q_SERCA_Ca_complexes v2 Shelley Fong 2021-11-08 Output q_SERCA_Ca_complexes https://staging.physiomeproject.org/workspace/7a5/@@file/93b9f8e15f4c38694495f6a705fce8db2f4b9550 Output q_SERCA_Ca_complexes Shelley Fong 2021-11-08 Moving gate states to local comp only https://staging.physiomeproject.org/workspace/7a5/@@file/5a68fec19ca96cc9f576d39aba6b31de61e2d3bf Moving gate states to local comp only Shelley Fong 2021-11-08 Reorganising code, and converting ODEs to non-zero for all ionic species https://staging.physiomeproject.org/workspace/7a5/@@file/8e94ba561eac3c5b4b1d1b7783280dba2f200502 Reorganising code, and converting ODEs to non-zero for all ionic species Shelley Fong 2021-11-05 Fix plot with new Knames https://staging.physiomeproject.org/workspace/7a5/@@file/ea9bc7af1b5d035266e25ba6bfd0dfd4ed54c9aa Fix plot with new Knames Shelley Fong 2021-11-05 fixing Cai name https://staging.physiomeproject.org/workspace/7a5/@@file/fdfbf43a9ee2cd72aaf3964413f645e0d94ef5b6 fixing Cai name Shelley Fong 2021-11-03 fixing SR name https://staging.physiomeproject.org/workspace/7a5/@@file/e53553610f4635488701b0e2f861f89f0947a4b9 fixing SR name Shelley Fong 2021-11-03 fixing Kname https://staging.physiomeproject.org/workspace/7a5/@@file/58dd2da934c4e9f478a4116040d801c88c1ab7ab fixing Kname Shelley Fong 2021-11-03 Making formatting and imports/exports consistent with other modules https://staging.physiomeproject.org/workspace/7a5/@@file/aedfdc9d6618abb67b6c2805a7519647f301296b Making formatting and imports/exports consistent with other modules Shelley Fong 2021-11-02 Fixing naming labels https://staging.physiomeproject.org/workspace/7a5/@@file/e7969adf22adfa4b61a81e2b0f7202884f583435 Fixing naming labels Shelley Fong 2021-11-02 Rename time https://staging.physiomeproject.org/workspace/7a5/@@file/41ba6e656d371bcf374fd6f3456309ca6f7f1e0e Rename time Shelley Fong 2021-11-02 Fixing rxnID names https://staging.physiomeproject.org/workspace/7a5/@@file/a5a85f2a3ab0693a64f2dd0bf617fa0ca9e72c82 Fixing rxnID names Shelley Fong 2021-10-29 Fixing Kname https://staging.physiomeproject.org/workspace/7a5/@@file/451524d321fbb99a25d095ae4f915d7cb1102b1d Fixing Kname Shelley Fong 2021-10-29 Fixing caps https://staging.physiomeproject.org/workspace/7a5/@@file/3de43eaa9b67bf3ea1957b3890c9fe5e82972336 Fixing caps Shelley Fong 2021-10-29 Fixing 4 arguments v2 https://staging.physiomeproject.org/workspace/7a5/@@file/6581853b4a97a63d231987cb368891a968762507 Fixing 4 arguments v2 Shelley Fong 2021-10-29 Fixing 4 arguments https://staging.physiomeproject.org/workspace/7a5/@@file/c8e94fa540a3b12294b5da0d0c3f32ae34024d69 Fixing 4 arguments Shelley Fong 2021-10-29 Separating kinetic_parameters function into its own file https://staging.physiomeproject.org/workspace/7a5/@@file/e96c27f1b302227b68a47a8072f07a7048dabc3f Separating kinetic_parameters function into its own file Shelley Fong 2021-10-29 Adding script to find BG parameters https://staging.physiomeproject.org/workspace/7a5/@@file/84946bde4e7490903b7cd9807abe9ff235101cf8 Adding script to find BG parameters Shelley Fong 2021-10-28 Using import of units and constants https://staging.physiomeproject.org/workspace/7a5/@@file/dc0f481336ba4763180bc29bddc2e63570b0e3a1 Using import of units and constants Shelley Fong 2021-10-27 Init https://staging.physiomeproject.org/workspace/7a5/@@file/d158bab90f8e59033623d7db662a89d973fad3b1 Init Shelley Fong 2021-10-27