Location: BG_TRPN_buffer @ 8ead75964e55 / parameter_finder / kinetic_parameters_TRPN_buffer.py

Author:
Shelley Fong <s.fong@auckland.ac.nz>
Date:
2022-03-08 11:42:38+13:00
Desc:
Removing C_m
Permanent Source URI:
https://staging.physiomeproject.org/workspace/829/rawfile/8ead75964e559839d9e9926d9784c5d76f201a42/parameter_finder/kinetic_parameters_TRPN_buffer.py
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import math
import numpy as np

def kinetic_parameters(M, include_type2_reactions, dims, V):
    fast_kinetic_constant = 1e6

    Km_TRPN = 0.5e-3 # unit    mM

    kf_TRPN = fast_kinetic_constant
    kr_TRPN = fast_kinetic_constant * Km_TRPN

    W = [1, V['V_myo'], V['V_myo'], V['V_myo']]
    k_kinetic = [kf_TRPN, kr_TRPN]
    N_cT = []
    K_C = []

    return (k_kinetic, N_cT, K_C, W)