def model individual_Ks_channel as def import using "units_and_constants/units_BG.cellml" for unit mM using unit mM; unit fmol using unit fmol; unit per_fmol using unit per_fmol; unit J_per_mol using unit J_per_mol; unit fmol_per_sec using unit fmol_per_sec; unit C_per_mol using unit C_per_mol; unit J_per_C using unit J_per_C; unit microm3 using unit microm3; unit fF using unit fF; unit fC using unit fC; unit fA using unit fA; unit per_second using unit per_second; unit millivolt using unit millivolt; unit per_sec using unit per_sec; unit J_per_K_per_mol using unit J_per_K_per_mol; unit fmol_per_L using unit fmol_per_L; unit fmol_per_L_per_sec using unit fmol_per_L_per_sec; unit per_sec_per_fmol_per_L using unit per_sec_per_fmol_per_L; unit uM using unit uM; unit mM_per_sec using unit mM_per_sec; unit uM_per_sec using unit uM_per_sec; unit pL using unit pL; unit m_to_u using unit m_to_u; enddef; def import using "units_and_constants/constants_BG.cellml" for comp constants using comp constants; enddef; def comp environment as var time: second {pub: out}; // initial values var q_K_i: fmol {init: 1e-888, pub: out}; var q_K_o: fmol {init: 1e-888, pub: out}; var q_Sa: fmol {init: 1e-888, pub: out}; var q_Sb: fmol {init: 1e-888, pub: out}; var q_Sc: fmol {init: 1e-888, pub: out}; var q_Sd: fmol {init: 1e-888, pub: out}; // From submodule var v_Ks: fmol_per_sec {pub: in}; var v_x10: fmol_per_sec {pub: in}; var v_x11: fmol_per_sec {pub: in}; var v_x20: fmol_per_sec {pub: in}; var v_x21: fmol_per_sec {pub: in}; ode(q_K_i, time) = vvv; ode(q_K_o, time) = vvv; ode(q_Sa, time) = vvv; ode(q_Sb, time) = vvv; ode(q_Sc, time) = vvv; ode(q_Sd, time) = vvv; enddef; def comp Ks_channel_parameters as var kappa_Ks: fmol_per_sec {init: 4805.32, pub: out}; var kappa_x10: fmol_per_sec {init: 1.70139, pub: out}; var kappa_x11: fmol_per_sec {init: 1.79332, pub: out}; var kappa_x20: fmol_per_sec {init: 0.391403, pub: out}; var kappa_x21: fmol_per_sec {init: 0.395408, pub: out}; var K_K_i: per_fmol {init: 2.01513, pub: out}; var K_K_o: per_fmol {init: 13.3772, pub: out}; var K_Sa: per_fmol {init: 0.855402, pub: out}; var K_Sb: per_fmol {init: 0.846737, pub: out}; var K_Sc: per_fmol {init: 0.811553, pub: out}; var K_Sd: per_fmol {init: 0.803333, pub: out}; enddef; def comp Ks_channel as var time: second {pub: in}; var R: J_per_K_per_mol {pub: in}; var T: kelvin {pub: in}; // parameters var kappa_Ks: fmol_per_sec {pub: in}; var kappa_x10: fmol_per_sec {pub: in}; var kappa_x11: fmol_per_sec {pub: in}; var kappa_x20: fmol_per_sec {pub: in}; var kappa_x21: fmol_per_sec {pub: in}; var K_K_i: per_fmol {pub: in}; var K_K_o: per_fmol {pub: in}; var K_Sa: per_fmol {pub: in}; var K_Sb: per_fmol {pub: in}; var K_Sc: per_fmol {pub: in}; var K_Sd: per_fmol {pub: in}; // Input from global environment var q_K_i: fmol {pub: in}; var q_K_o: fmol {pub: in}; var q_Sa: fmol {pub: in}; var q_Sb: fmol {pub: in}; var q_Sc: fmol {pub: in}; var q_Sd: fmol {pub: in}; // Constitutive parameters var mu_K_i: J_per_mol; var mu_K_o: J_per_mol; var mu_Sa: J_per_mol; var mu_Sb: J_per_mol; var mu_Sc: J_per_mol; var mu_Sd: J_per_mol; var v_Ks: fmol_per_sec {pub: out}; var v_x10: fmol_per_sec {pub: out}; var v_x11: fmol_per_sec {pub: out}; var v_x20: fmol_per_sec {pub: out}; var v_x21: fmol_per_sec {pub: out}; mu_K_i = R*T*ln(K_K_i*q_K_i); mu_K_o = R*T*ln(K_K_o*q_K_o); mu_Sa = R*T*ln(K_Sa*q_Sa); mu_Sb = R*T*ln(K_Sb*q_Sb); mu_Sc = R*T*ln(K_Sc*q_Sc); mu_Sd = R*T*ln(K_Sd*q_Sd); v_Ks = ppp; v_x10 = ppp; v_x11 = ppp; v_x20 = ppp; v_x21 = ppp; enddef; def map between environment and Ks_channel for vars time and time; vars q_K_i and q_K_i; vars q_K_o and q_K_o; vars q_Sa and q_Sa; vars q_Sb and q_Sb; vars q_Sc and q_Sc; vars q_Sd and q_Sd; vars v_Ks and v_Ks; vars v_x10 and v_x10; vars v_x11 and v_x11; vars v_x20 and v_x20; vars v_x21 and v_x21; enddef; def map between Ks_channel and Ks_channel_parameters for vars kappa_Ks and kappa_Ks; vars kappa_x10 and kappa_x10; vars kappa_x11 and kappa_x11; vars kappa_x20 and kappa_x20; vars kappa_x21 and kappa_x21; vars K_K_i and K_K_i; vars K_K_o and K_K_o; vars K_Sa and K_Sa; vars K_Sb and K_Sb; vars K_Sc and K_Sc; vars K_Sd and K_Sd; enddef; def map between constants and Ks_channel for vars R and R; vars T and T; enddef; enddef;