Location: BG_to_channel @ 950b3b004fb4 / BG_to.cellml
- Author:
- Shelley Fong <s.fong@auckland.ac.nz>
- Date:
- 2022-03-22 15:21:27+13:00
- Desc:
- Updating channel density to literature value (Fedida91)
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/82e/rawfile/950b3b004fb4e23b7a4177d7aaf1d7ec8062b261/BG_to.cellml
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<variable name="Af_K" units="J_per_mol"/>
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<apply>
<eq/>
<ci>Ar_y20</ci>
<apply>
<plus/>
<ci>mu_s21_to</ci>
<apply>
<times/>
<ci>z_yr</ci>
<ci>F</ci>
<ci>V_mem</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Af_y30</ci>
<apply>
<plus/>
<ci>mu_s30_to</ci>
<apply>
<times/>
<ci>z_yf</ci>
<ci>F</ci>
<ci>V_mem</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Ar_y30</ci>
<apply>
<plus/>
<ci>mu_s31_to</ci>
<apply>
<times/>
<ci>z_yr</ci>
<ci>F</ci>
<ci>V_mem</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_z00</ci>
<apply>
<times/>
<ci>kappa_z00</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>Af_z00</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>Ar_z00</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_z10</ci>
<apply>
<times/>
<ci>kappa_z10</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>Af_z10</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>Ar_z10</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_z20</ci>
<apply>
<times/>
<ci>kappa_z20</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>Af_z20</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>Ar_z20</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_z01</ci>
<apply>
<times/>
<ci>kappa_z01</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>Af_z01</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>Ar_z01</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_z11</ci>
<apply>
<times/>
<ci>kappa_z11</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>Af_z11</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>Ar_z11</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_z21</ci>
<apply>
<times/>
<ci>kappa_z21</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>Af_z21</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>Ar_z21</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_y00</ci>
<apply>
<times/>
<ci>kappa_y00</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>Af_y00</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>Ar_y00</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_y10</ci>
<apply>
<times/>
<ci>kappa_y10</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>Af_y10</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>Ar_y10</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_y20</ci>
<apply>
<times/>
<ci>kappa_y20</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>Af_y20</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>Ar_y20</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_y30</ci>
<apply>
<times/>
<ci>kappa_y30</ci>
<apply>
<minus/>
<apply>
<exp/>
<apply>
<divide/>
<ci>Af_y30</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<ci>Ar_y30</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v_s00_to</ci>
<apply>
<minus/>
<apply>
<minus/>
<ci>v_z00</ci>
</apply>
<ci>v_y00</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_s10_to</ci>
<apply>
<minus/>
<apply>
<minus/>
<ci>v_z00</ci>
<ci>v_z10</ci>
</apply>
<ci>v_y10</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_s20_to</ci>
<apply>
<minus/>
<apply>
<minus/>
<ci>v_z10</ci>
<ci>v_z20</ci>
</apply>
<ci>v_y20</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_s30_to</ci>
<apply>
<minus/>
<ci>v_z20</ci>
<ci>v_y30</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_s01_to</ci>
<apply>
<minus/>
<ci>v_y00</ci>
<ci>v_z01</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_s11_to</ci>
<apply>
<plus/>
<apply>
<minus/>
<ci>v_z01</ci>
<ci>v_z11</ci>
</apply>
<ci>v_y10</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_s21_to</ci>
<apply>
<plus/>
<apply>
<minus/>
<ci>v_z11</ci>
<ci>v_z21</ci>
</apply>
<ci>v_y20</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>v_s31_to</ci>
<apply>
<plus/>
<ci>v_z21</ci>
<ci>v_y30</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>mu_s00_to</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S00_to</ci>
<ci>q_s00_to</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>mu_s10_to</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S10_to</ci>
<ci>q_s10_to</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>mu_s20_to</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S20_to</ci>
<ci>q_s20_to</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>mu_s30_to</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S30_to</ci>
<ci>q_s30_to</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>mu_s01_to</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S01_to</ci>
<ci>q_s01_to</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>mu_s11_to</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S11_to</ci>
<ci>q_s11_to</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>mu_s21_to</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S21_to</ci>
<ci>q_s21_to</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>mu_s31_to</ci>
<apply>
<times/>
<ci>R</ci>
<ci>T</ci>
<apply>
<ln/>
<apply>
<times/>
<ci>K_S31_to</ci>
<ci>q_s31_to</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_s00_to</ci>
</apply>
<ci>v_s00_to</ci>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_s10_to</ci>
</apply>
<ci>v_s10_to</ci>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_s20_to</ci>
</apply>
<ci>v_s20_to</ci>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_s30_to</ci>
</apply>
<ci>v_s30_to</ci>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_s01_to</ci>
</apply>
<ci>v_s01_to</ci>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_s11_to</ci>
</apply>
<ci>v_s11_to</ci>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_s21_to</ci>
</apply>
<ci>v_s21_to</ci>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>q_s31_to</ci>
</apply>
<ci>v_s31_to</ci>
</apply>
</math>
</component>
<connection>
<map_components component_1="environment" component_2="to"/>
<map_variables variable_1="time" variable_2="t"/>
<map_variables variable_1="R" variable_2="R"/>
<map_variables variable_1="T" variable_2="T"/>
<map_variables variable_1="F" variable_2="F"/>
<map_variables variable_1="q_K_i" variable_2="q_K_i"/>
<map_variables variable_1="q_K_o" variable_2="q_K_o"/>
<map_variables variable_1="q_mem" variable_2="q_mem"/>
<map_variables variable_1="C_m" variable_2="C_m"/>
<map_variables variable_1="v_to" variable_2="v_to"/>
<map_variables variable_1="I_mem_to" variable_2="I_mem_to"/>
</connection>
<connection>
<map_components component_1="to" component_2="to_parameters"/>
<map_variables variable_1="kappa_to" variable_2="kappa_to"/>
<map_variables variable_1="kappa_z00" variable_2="kappa_z00"/>
<map_variables variable_1="kappa_z01" variable_2="kappa_z01"/>
<map_variables variable_1="kappa_z10" variable_2="kappa_z10"/>
<map_variables variable_1="kappa_z11" variable_2="kappa_z11"/>
<map_variables variable_1="kappa_z20" variable_2="kappa_z20"/>
<map_variables variable_1="kappa_z21" variable_2="kappa_z21"/>
<map_variables variable_1="kappa_y00" variable_2="kappa_y00"/>
<map_variables variable_1="kappa_y10" variable_2="kappa_y10"/>
<map_variables variable_1="kappa_y20" variable_2="kappa_y20"/>
<map_variables variable_1="kappa_y30" variable_2="kappa_y30"/>
<map_variables variable_1="K_K_i" variable_2="K_K_i"/>
<map_variables variable_1="K_K_o" variable_2="K_K_o"/>
<map_variables variable_1="K_S00_to" variable_2="K_S00_to"/>
<map_variables variable_1="K_S10_to" variable_2="K_S10_to"/>
<map_variables variable_1="K_S20_to" variable_2="K_S20_to"/>
<map_variables variable_1="K_S30_to" variable_2="K_S30_to"/>
<map_variables variable_1="K_S01_to" variable_2="K_S01_to"/>
<map_variables variable_1="K_S11_to" variable_2="K_S11_to"/>
<map_variables variable_1="K_S21_to" variable_2="K_S21_to"/>
<map_variables variable_1="K_S31_to" variable_2="K_S31_to"/>
<map_variables variable_1="z_zf" variable_2="z_zf"/>
<map_variables variable_1="z_yf" variable_2="z_yf"/>
<map_variables variable_1="z_zr" variable_2="z_zr"/>
<map_variables variable_1="z_yr" variable_2="z_yr"/>
<map_variables variable_1="zK" variable_2="zK"/>
</connection>
</model>