Location: BG_pH_B1 @ 07344da90b8b / parameter_finder / kinetic_parameters_pH_B1.py

Author:
Shelley Fong <sfon036@UoA.auckland.ac.nz>
Date:
2022-05-26 09:21:36+12:00
Desc:
Change fkc to 1e9
Permanent Source URI:
https://staging.physiomeproject.org/workspace/883/rawfile/07344da90b8bf0bcfa6da51f0689f8485ced7ea7/parameter_finder/kinetic_parameters_pH_B1.py
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import math
import numpy as np

def kinetic_parameters(M, include_type2_reactions, dims, V):
    fast_kinetic_constant = 1e9
    num_cols = dims['num_cols']
    num_rows = dims['num_rows']

    pK1 = 6.03
    Km_B1 = pow(10,-pK1) # unit    mM

    kf_B1 = fast_kinetic_constant
    kr_B1 = fast_kinetic_constant * Km_B1

    W = [1]+ [V['V_myo']]*num_rows
    k_kinetic = [kf_B1, kr_B1]
    N_cT = []
    K_C = []

    return (k_kinetic, N_cT, K_C, W)