Location: BG_pH_B2 @ 02e01e011b5f / parameter_finder / kinetic_parameters_pH_B2.py

Author:
Shelley Fong <sfon036@UoA.auckland.ac.nz>
Date:
2022-05-23 16:10:49+12:00
Desc:
Remove unused units
Permanent Source URI:
https://staging.physiomeproject.org/workspace/884/rawfile/02e01e011b5f0635697e3ee81090d10370fc42fc/parameter_finder/kinetic_parameters_pH_B2.py
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import math
import numpy as np

def kinetic_parameters(M, include_type2_reactions, dims, V):
    fast_kinetic_constant = 1e6
    num_cols = dims['num_cols']
    num_rows = dims['num_rows']

    pK2 = 7.57
    Km_B2 = pow(10,-pK2) # unit    mM

    kf_B2 = fast_kinetic_constant
    kr_B2 = fast_kinetic_constant * Km_B2

    W = [1]+ [V['V_myo']]*num_rows
    k_kinetic = [kf_B2, kr_B2]
    N_cT = []
    K_C = []

    return (k_kinetic, N_cT, K_C, W)