Location: BG_pH_B2 @ 2ea381663333 / parameter_finder / kinetic_parameters_pH_B2.py

Author:
Shelley Fong <sfon036@UoA.auckland.ac.nz>
Date:
2022-05-23 16:08:37+12:00
Desc:
Init
Permanent Source URI:
https://staging.physiomeproject.org/workspace/884/rawfile/2ea38166333321d67a97018ff595156fbfc50d37/parameter_finder/kinetic_parameters_pH_B2.py
Compare... Download Source 

import math
import numpy as np

def kinetic_parameters(M, include_type2_reactions, dims, V):
    fast_kinetic_constant = 1e6
    num_cols = dims['num_cols']
    num_rows = dims['num_rows']

    pK2 = 7.57
    Km_B2 = pow(10,-pK2) # unit    mM

    kf_B2 = fast_kinetic_constant
    kr_B2 = fast_kinetic_constant * Km_B2

    W = [1]+ [V['V_myo']]*num_rows
    k_kinetic = [kf_B2, kr_B2]
    N_cT = []
    K_C = []

    return (k_kinetic, N_cT, K_C, W)