Location: A review of cardiac cellular electrophysiology models @ 1b3862589abf / tutorial / TNNP-S1S2-500.xml

Author:
David Nickerson <david.nickerson@gmail.com>
Date:
2021-09-17 15:50:49+12:00
Desc:
tweak html formatting
Permanent Source URI:
https://staging.physiomeproject.org/workspace/a1/rawfile/1b3862589abf79ae9119ee0b5e99a8b785d762e1/tutorial/TNNP-S1S2-500.xml

<?xml version="1.0" encoding="iso-8859-1"?>

<model
    name="tnnp_s1s2_restitution_protocol"
    cmeta:id="tnnp_s1s2_restitution_protocol"
    xmlns="http://www.cellml.org/cellml/1.1#"
    xmlns:cellml="http://www.cellml.org/cellml/1.1#"
    xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
    xmlns:xlink="http://www.w3.org/1999/xlink">
  <rdf:RDF
      xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
      xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
      xmlns:bqs="http://www.cellml.org/bqs/1.0#"
      xmlns:dc="http://purl.org/dc/elements/1.1/"
      xmlns:dcterms="http://purl.org/dc/terms/"
      xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#"
      xmlns:cs="http://www.cellml.org/metadata/simulation/1.0#"
      xmlns:cg="http://www.cellml.org/metadata/graphs/1.0#">
    <rdf:Description rdf:about="">
      <dc:creator rdf:parseType="Resource">
        <vCard:N rdf:parseType="Resource">
          <vCard:Family>Nickerson</vCard:Family>
          <vCard:Given>David</vCard:Given>
        </vCard:N>
        <vCard:EMAIL rdf:parseType="Resource">
          <rdf:value>david.nickerson@nus.edu.sg</rdf:value>
          <rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
        </vCard:EMAIL>
        <vCard:ORG rdf:parseType="Resource">
          <vCard:Orgname>National University of Singapore</vCard:Orgname>
          <vCard:Orgunit>Division of Bioengineering</vCard:Orgunit>
        </vCard:ORG>
      </dc:creator>
      <dcterms:created rdf:parseType="Resource">
        <dcterms:W3CDTF>2007-04-24</dcterms:W3CDTF>
      </dcterms:created>
      <dc:publisher>
        Division of Bioengineering, National University of Singapore
      </dc:publisher>
    </rdf:Description>
    <rdf:Description rdf:about="#tnnp_s1s2_restitution_protocol_VALUE">
      <cs:simulation>
        <rdf:Description rdf:ID="simulation">
          <cs:simulationName>S1S2</cs:simulationName>
          <cs:multistepMethod>bdf</cs:multistepMethod>
          <cs:iterationMethod>newton</cs:iterationMethod>
          <cs:linearSolver>dense</cs:linearSolver>
          <cs:boundIntervals rdf:parseType="Collection">
            <rdf:Description>
              <cs:boundVariable>
                <rdf:Description rdf:about="http://www.bioeng.nus.edu.sg/compbiolab/papers/nickerson-PBMB-2008/experiments/TNNP-S1S2.xml#time"/>
              </cs:boundVariable>
              <cs:maximumStepSize 
                rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
                0.5
              </cs:maximumStepSize>
              <cs:tabulationStepSize
                rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
                5.0
              </cs:tabulationStepSize>
              <cs:startingValue
                rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
                0
              </cs:startingValue>
              <cs:endingValue
                rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
                11e3
              </cs:endingValue>
            </rdf:Description>
          </cs:boundIntervals>
        </rdf:Description>
      </cs:simulation>
    </rdf:Description>
  </rdf:RDF>
  
  <import xlink:href="http://www.bioeng.nus.edu.sg/compbiolab/cellml/models/common/units.xml">
    <units name="ms" units_ref="ms"/>
  </import>
  <import xlink:href="http://www.bioeng.nus.edu.sg/compbiolab/papers/nickerson-PBMB-2008/experiments/TNNP-S1S2.xml">
    <component name="S1S2" component_ref="interface"/>
  </import>

  <component name="params" cmeta:id="params">
    <variable name="basicCycleLength" initial_value="1000" public_interface="out" units="ms"/>
    <variable name="S2Interval" initial_value="500" public_interface="out" units="ms"/>
  </component>
  <connection>
    <map_components component_1="params" component_2="S1S2"/>
    <map_variables variable_1="basicCycleLength" variable_2="basicCycleLength"/>
    <map_variables variable_1="S2Interval" variable_2="S2Interval"/>
  </connection>
</model>