https://staging.physiomeproject.org/workspace/b61 en-us Intracellular pH regulation This workspace documents the parameterization of the bond graph model of intracellular pH regulation Add H buffering in the acid BG model https://staging.physiomeproject.org/workspace/b61/@@file/920a714dbe070a8ab1215d82e465d4aaa7216a0a Add H buffering in the acid BG model Weiwei Ai 2024-02-27 Add energy analysis of the original model; https://staging.physiomeproject.org/workspace/b61/@@file/2f9c285f9e4f2a631ae3915cf9ec6d2ab4194104 Add energy analysis of the original model; fix log in the potential computation (should be ln) WeiweiAi 2024-02-15 Add models for energy analysis https://staging.physiomeproject.org/workspace/b61/@@file/9e49e4b15658ddd2ca058e8cc29e94cb2818486e Add models for energy analysis WeiweiAi 2024-02-13 Unify kappa_H_m=10 https://staging.physiomeproject.org/workspace/b61/@@file/b514f59fa69654b2eba1b374fe50aa2657e2b3a8 Unify kappa_H_m=10 WeiweiAi 2024-02-12 Refit the base model https://staging.physiomeproject.org/workspace/b61/@@file/65c0e989bc16128908b3c6a104b4a9d9b3de2b72 Refit the base model WeiweiAi 2024-02-09 Add new model *fit_1.cellml; https://staging.physiomeproject.org/workspace/b61/@@file/2325464752c3a2c9916a3a792f1e1ffc3ccf73b2 Add new model *fit_1.cellml; Refit CO2_BG_V3; Boron_acid_BG_V3_Hi using Boron version of ODE for q_H_i; WeiweiAi 2024-02-09 Add H_i plot https://staging.physiomeproject.org/workspace/b61/@@file/91e8873214cd9cc1a9fbf82feb1f2b7e2c88a3b1 Add H_i plot WeiweiAi 2024-02-07 Try to reduce assumptions by using constraints https://staging.physiomeproject.org/workspace/b61/@@file/2b96fe26a8eec6623f0f9b011df35d8f4347e3a5 Try to reduce assumptions by using constraints WeiweiAi 2024-02-07 correct the epsilon effect on v_H_m https://staging.physiomeproject.org/workspace/b61/@@file/957719f7817fb2460159c5fdfa0917a175301f0e correct the epsilon effect on v_H_m WeiweiAi 2024-02-06 Add full model fit https://staging.physiomeproject.org/workspace/b61/@@file/d89b88467a2f1551667bed22fc1319f805aed4d0 Add full model fit WeiweiAi 2024-02-06 Update base models https://staging.physiomeproject.org/workspace/b61/@@file/bb37bbe8fcce0608f2df5efccfa1e6f45d220305 Update base models WeiweiAi 2024-02-06 Update params for CellMLV2 files https://staging.physiomeproject.org/workspace/b61/@@file/001121b8aa71632c5d10950e50e5704e7f937cec Update params for CellMLV2 files WeiweiAi 2024-02-06 Update the params based on the fitting result https://staging.physiomeproject.org/workspace/b61/@@file/e35969dca5c3e73647caae0a7ce795ae2300dc07 Update the params based on the fitting result WeiweiAi 2024-02-06 Add BG_V3 modules https://staging.physiomeproject.org/workspace/b61/@@file/97ce7d404db76ec8250d1264f4d99b5edbc12e50 Add BG_V3 modules WeiweiAi 2024-02-06 Add the non-BG models of base; https://staging.physiomeproject.org/workspace/b61/@@file/8b245f84dc2d49bc6173e3e5ae04ed72ade16d1d Add the non-BG models of base; Add CellMLV2 and data WeiweiAi 2024-02-06 Upload modified BG model with the name changed to V3, which is the lecture note version https://staging.physiomeproject.org/workspace/b61/@@file/69f42a0643f413bcf4f9b5576a5764ee48d78862 Upload modified BG model with the name changed to V3, which is the lecture note version WeiweiAi 2024-02-06 Update modules https://staging.physiomeproject.org/workspace/b61/@@file/8f46d054be2ad4c0cc1de7980eed4f26f8f2e432 Update modules WeiweiAi 2024-02-05 Add sedml files; https://staging.physiomeproject.org/workspace/b61/@@file/7816e680fc59b7e383e07fbe3b0fdab7180859e6 Add sedml files; Update cellml to allow OpenCOR simulation (add ODE to provide input ) WeiweiAi 2024-02-05 Add modules https://staging.physiomeproject.org/workspace/b61/@@file/1d43a75da0e65bcb74830ce11cbb30d65e7e3ffa Add modules WeiweiAi 2024-02-05 Revert "Add the bond graph models emailed by Prof. Peter Hunter" https://staging.physiomeproject.org/workspace/b61/@@file/b9acad600597f19e5f31907b7653906283c66ffc Revert "Add the bond graph models emailed by Prof. Peter Hunter" This reverts commit 9ff73866346692c9b1a05167620acd4a52139375. WeiweiAi 2024-02-05 Add the bond graph models emailed by Prof. Peter Hunter https://staging.physiomeproject.org/workspace/b61/@@file/9ff73866346692c9b1a05167620acd4a52139375 Add the bond graph models emailed by Prof. Peter Hunter WeiweiAi 2024-02-05