Location: Intracellular pH regulation @ 2325464752c3 / models / CellMLV2 / Boron_NH3.sedml

Author:
WeiweiAi <wai484@aucklanduni.ac.nz>
Date:
2024-02-09 13:41:13+13:00
Desc:
Add new model *fit_1.cellml; Refit CO2_BG_V3; Boron_acid_BG_V3_Hi using Boron version of ODE for q_H_i;
Permanent Source URI:
https://staging.physiomeproject.org/workspace/b61/rawfile/2325464752c3a2c9916a3a792f1e1ffc3ccf73b2/models/CellMLV2/Boron_NH3.sedml
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<?xml version="1.0" encoding="UTF-8"?>
<sedML xmlns="http://sed-ml.org/sed-ml/level1/version4" level="1" version="4">
  <listOfModels>
    <model id="Boron_NH3" language="urn:sedml:language:cellml" source="Boron_NH3.cellml"/>
  </listOfModels>
  <listOfSimulations>
    <uniformTimeCourse id="sim_Boron_NH3" initialTime="0" outputStartTime="0" outputEndTime="20" numberOfSteps="20">
      <algorithm name="VODE" kisaoID="KISAO:0000535">
        <listOfAlgorithmParameters>
          <algorithmParameter name="max_step" kisaoID="KISAO:0000467" value="1"/>
        </listOfAlgorithmParameters>
      </algorithm>
    </uniformTimeCourse>
  </listOfSimulations>
  <listOfTasks>
    <task id="task_Boron_NH3" modelReference="Boron_NH3" simulationReference="sim_Boron_NH3"/>
  </listOfTasks>
  <listOfDataGenerators>
    <dataGenerator id="dg_Boron_NH3_J_NH3" name="dg_Boron_NH3_J_NH3">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <apply>
          <times/>
          <ci> Boron_NH3_J_NH3 </ci>
          <ci> scale </ci>
        </apply>
      </math>
      <listOfVariables>
        <variable id="Boron_NH3_J_NH3" target="/cellml:model/cellml:component[@name=&quot;main&quot;]/cellml:variable[@name=&quot;J_NH3&quot;]" taskReference="task_Boron_NH3" modelReference="Boron_NH3"/>
      </listOfVariables>
      <listOfParameters>
        <parameter id="scale" value="8000"/>
      </listOfParameters>
    </dataGenerator>
    <dataGenerator id="dg_Boron_NH3_t" name="dg_Boron_NH3_t">
      <math xmlns="http://www.w3.org/1998/Math/MathML">
        <ci> Boron_NH3_t </ci>
      </math>
      <listOfVariables>
        <variable id="Boron_NH3_t" target="/cellml:model/cellml:component[@name=&quot;main&quot;]/cellml:variable[@name=&quot;t&quot;]" taskReference="task_Boron_NH3" modelReference="Boron_NH3"/>
      </listOfVariables>
    </dataGenerator>
  </listOfDataGenerators>
  <listOfOutputs>
    <report id="report_task_Boron_NH3" name="report_task_Boron_NH3">
      <listOfDataSets>
        <dataSet id="dataset_Boron_NH3_J_NH3" label="J_NH3" dataReference="dg_Boron_NH3_J_NH3"/>
        <dataSet id="dataset_Boron_NH3_t" label="t" dataReference="dg_Boron_NH3_t"/>
      </listOfDataSets>
    </report>
  </listOfOutputs>
</sedML>