https://staging.physiomeproject.org/workspace/b65 en-us SLC transporters This workspace holds bond graph templates for SLC transporters. Update the csv and json files as well https://staging.physiomeproject.org/workspace/b65/@@file/cc4effc03581119d92df4eb4fe08eaeb698ea86e Update the csv and json files as well Weiwei Ai 2025-03-21 Correct the unit issue for the cell volume from 8.5e5 pL to 0.085 pL, and accordingly scale the thermodynical parameters of Na and Glc (*10^7) https://staging.physiomeproject.org/workspace/b65/@@file/371f5295e81367bfada04a8eb136b29c881d92dc Correct the unit issue for the cell volume from 8.5e5 pL to 0.085 pL, and accordingly scale the thermodynical parameters of Na and Glc (*10^7) Weiwei Ai 2025-03-21 Add SGLT1_kinetic model and relevant scripts to double check Figure 12 in BJ. https://staging.physiomeproject.org/workspace/b65/@@file/84dab8cf27ef40bd6e6bf1adb20caae39166a80b Add SGLT1_kinetic model and relevant scripts to double check Figure 12 in BJ. Weiwei Ai 2025-01-29 Update plot scripts https://staging.physiomeproject.org/workspace/b65/@@file/efd42da2e908f2780ee4dcdb0ba19e00d606ed99 Update plot scripts Weiwei Ai 2025-01-14 Modify the figure formart, size and resolution https://staging.physiomeproject.org/workspace/b65/@@file/44563c41696035c8c035ba4a0c88e45cb1dcb5c1 Modify the figure formart, size and resolution Weiwei Ai 2024-12-04 Modify SGLT1_BG_fast.cellml to allow users to modify test_volt and Glco in the simulation tab. https://staging.physiomeproject.org/workspace/b65/@@file/65898d4880efb52227f2860ddafb4c8cde585d47 Modify SGLT1_BG_fast.cellml to allow users to modify test_volt and Glco in the simulation tab. Weiwei Ai 2024-10-21 Add new figure for GLUT2 https://staging.physiomeproject.org/workspace/b65/@@file/361be3e922a7219535333f5aeb44053806547777 Add new figure for GLUT2 Weiwei Ai 2024-10-02 Add files to get BG params for GLUT2 https://staging.physiomeproject.org/workspace/b65/@@file/5b11dfd21352d09e8c20aeb37fedebe24de9d68e Add files to get BG params for GLUT2 Weiwei Ai 2024-10-02 Make some Ks params_BG_FIG10.cellml consistent with params_BG.cellml. Rerun the simulation and plot the figures. https://staging.physiomeproject.org/workspace/b65/@@file/8cf5166b2490399a0188bbdc5256707af9196a8a Make some Ks params_BG_FIG10.cellml consistent with params_BG.cellml. Rerun the simulation and plot the figures. Weiwei Ai 2024-10-02 Add a submodule buildBG; Add scripts, csv files to convert the kinetic params to BG params for SLC5. https://staging.physiomeproject.org/workspace/b65/@@file/e0911412cf2c5b641c2a62bba3f3a56567a95b4b Add a submodule buildBG; Add scripts, csv files to convert the kinetic params to BG params for SLC5. Weiwei Ai 2024-10-02 Use discrete dots for the data from refs. use k61=5 for Fig10 in Parent paper https://staging.physiomeproject.org/workspace/b65/@@file/e6eb5227a4986919321edef6f1d164739752fcee Use discrete dots for the data from refs. use k61=5 for Fig10 in Parent paper Weiwei Ai 2024-09-16 Seperate fast binding plot https://staging.physiomeproject.org/workspace/b65/@@file/fc0fce7e35c51ca9d154c034c338020c0dc8566c Seperate fast binding plot Weiwei Ai 2024-05-28 Reduce the number of steps https://staging.physiomeproject.org/workspace/b65/@@file/867012d2ec640dec0bef5ed61320faa18f15eb8e Reduce the number of steps Weiwei Ai 2024-05-28 Fixed typos https://staging.physiomeproject.org/workspace/b65/@@file/54428a600e2c560005a2d9d0a5608082f90a7c0c Fixed typos Weiwei Ai 2024-05-27 Removed the links to files. https://staging.physiomeproject.org/workspace/b65/@@file/e404cc862a856e4bf6715a0af308ed5ae4968d0b Removed the links to files. Weiwei Ai 2024-05-27 Test the path setting in readme https://staging.physiomeproject.org/workspace/b65/@@file/27b936ef317a4bbffdfb731a8adc084c7fdb1d5b Test the path setting in readme Weiwei Ai 2024-05-27 Update readme file https://staging.physiomeproject.org/workspace/b65/@@file/b7ec0e1728a7d93333c64719ad8e2ef696837d3f Update readme file Weiwei Ai 2024-05-27 Add README.rst https://staging.physiomeproject.org/workspace/b65/@@file/54f3d55342510adfa5b7913d94e7b8ab069e5dc1 Add README.rst Weiwei Ai 2024-05-27 Update figures and submodule sedCellML https://staging.physiomeproject.org/workspace/b65/@@file/6625532496cd4d09db3c72278c24fe5ef8cf84cd Update figures and submodule sedCellML Weiwei Ai 2024-05-27 modify labels https://staging.physiomeproject.org/workspace/b65/@@file/54a2652a0c6218458af69ff9aced03f52875624d modify labels Weiwei Ai 2024-05-27 changing ‘sugar’ to glucose in the labels https://staging.physiomeproject.org/workspace/b65/@@file/25eedc041ddd8fe60a84b4830f40db702f419e51 changing ‘sugar’ to glucose in the labels Weiwei Ai 2024-05-27 Change the slope duration to 1 ms https://staging.physiomeproject.org/workspace/b65/@@file/deec4e9edbacb5ed0094bd70e036b140af5ef54b Change the slope duration to 1 ms Weiwei Ai 2024-05-24 Use CellMLV1 models directly; modify the initial states; add slope for step functions; fix relative path https://staging.physiomeproject.org/workspace/b65/@@file/a9cc330a733f45ad628b68d88abb7a06946133b9 Use CellMLV1 models directly; modify the initial states; add slope for step functions; fix relative path Weiwei Ai 2024-05-24 Update sedCellMLPy https://staging.physiomeproject.org/workspace/b65/@@file/847b3b068dbc09411b52afcb34295142b7963409 Update sedCellMLPy Weiwei Ai 2024-05-24 Add original data; change to relative path; format the axis labels; https://staging.physiomeproject.org/workspace/b65/@@file/de5db6ae42f57e8a5cb7b4e1aec24803b1483fc4 Add original data; change to relative path; format the axis labels; Weiwei Ai 2024-05-23 Add figures https://staging.physiomeproject.org/workspace/b65/@@file/dfbdc1885ad0557cc4641c6aa29ceaa14e268a23 Add figures Weiwei Ai 2024-05-08 Add sedml and scripts for SGLT1 https://staging.physiomeproject.org/workspace/b65/@@file/4c70c12474d3ae6c1f083145619576bfaf426439 Add sedml and scripts for SGLT1 Weiwei Ai 2024-05-08 Add CellMLV2 for SGLT1; add fast binding data https://staging.physiomeproject.org/workspace/b65/@@file/9fd3365f60e3e56a237516b1193b37f49ad44e2a Add CellMLV2 for SGLT1; add fast binding data Weiwei Ai 2024-05-08 Rename and clean up the model files https://staging.physiomeproject.org/workspace/b65/@@file/8bf4c42c0352a6e61f0f0310a4a808bde7b90fe9 Rename and clean up the model files Weiwei Ai 2024-05-08 Add submodules and scripts for GLUT2. https://staging.physiomeproject.org/workspace/b65/@@file/5a017dba177e8aa7e499af0ada82ed139d9f0b3a Add submodules and scripts for GLUT2. Weiwei Ai 2024-05-08 Correct the direction of ss flux; update the fast parameters (so the solver can handle) https://staging.physiomeproject.org/workspace/b65/@@file/378f5bf1311102d61933906b9747d332a3ea69cf Correct the direction of ss flux; update the fast parameters (so the solver can handle) Weiwei Ai 2024-04-24 Add "fast binding" models https://staging.physiomeproject.org/workspace/b65/@@file/e97d6b0ffef73c4d0c4a1fa3a303718e8842338b Add "fast binding" models Weiwei Ai 2024-04-24 Make the pulse longer for ss simulation https://staging.physiomeproject.org/workspace/b65/@@file/e0e4f40f38ea3bdc6fdec6a6d85dc052609f7b76 Make the pulse longer for ss simulation Weiwei Ai 2024-04-23 Delete the models in CellMLV2 https://staging.physiomeproject.org/workspace/b65/@@file/e250d434940603e5d57451c14813c431f222b9db Delete the models in CellMLV2 Weiwei Ai 2024-04-23 Remove SGLT1_BG_ss model https://staging.physiomeproject.org/workspace/b65/@@file/787135a50b89b861b7e04946868449e545d6b8e6 Remove SGLT1_BG_ss model Weiwei Ai 2024-04-23 Remove Peter's old version of BG models https://staging.physiomeproject.org/workspace/b65/@@file/77bc264ff9301ffec7db887becaa7343be331208 Remove Peter's old version of BG models Weiwei Ai 2024-04-23 Add steady state model https://staging.physiomeproject.org/workspace/b65/@@file/59c302f2bbc5e1e47823508ccbb47a9ec2d6071f Add steady state model Weiwei Ai 2024-04-23 Add bond graph models for ref 2005 fig 3B https://staging.physiomeproject.org/workspace/b65/@@file/ca447f870d3be12963a885d5acd8da79af2a683d Add bond graph models for ref 2005 fig 3B Weiwei Ai 2024-04-19 Add digitized data https://staging.physiomeproject.org/workspace/b65/@@file/18e7c93521b1d6d9436f829680af288549a8e6f4 Add digitized data Weiwei Ai 2024-04-19 Add BG for steady-state simulation (i.e, a longer pulse) https://staging.physiomeproject.org/workspace/b65/@@file/c8bc4b889b3850d67cea87048416591cdb681ffd Add BG for steady-state simulation (i.e, a longer pulse) Weiwei Ai 2024-04-18 Add SGLT1 BG without an extra circuit https://staging.physiomeproject.org/workspace/b65/@@file/1ca0ff10d368d137819511a3dea6d082dcc35710 Add SGLT1 BG without an extra circuit Weiwei Ai 2024-04-18 Change the model name to GLUT2 according to Peter's suggestion https://staging.physiomeproject.org/workspace/b65/@@file/5d5a3c565390bd925178dfe8dd38ed2c661a742a Change the model name to GLUT2 according to Peter's suggestion Weiwei Ai 2024-04-18 Add CellMLV2 model and Parent 1992 Fig 3 data https://staging.physiomeproject.org/workspace/b65/@@file/690fadff9fbda39f32c006e60d59499765a4c784 Add CellMLV2 model and Parent 1992 Fig 3 data Weiwei Ai 2024-04-17 Add data from Parent1992; update the params; consider the background current; https://staging.physiomeproject.org/workspace/b65/@@file/3fe65da57abe015d3d5975f688fe51a75debb2f2 Add data from Parent1992; update the params; consider the background current; Weiwei Ai 2024-04-17 Make the directions of the charge flow consistent with the SLC 5_0.png https://staging.physiomeproject.org/workspace/b65/@@file/35ed757a6b4a9779bf7fc2832ec577a5172d6f81 Make the directions of the charge flow consistent with the SLC 5_0.png Weiwei Ai 2024-04-11 Add CSV files for Peter's version https://staging.physiomeproject.org/workspace/b65/@@file/5b374af70f2248b50429626da7b993d1107a5dad Add CSV files for Peter's version Weiwei Ai 2024-04-10 Add full BG with the parameters of fig3 and 4 in Parent 1992b model https://staging.physiomeproject.org/workspace/b65/@@file/bfaa55ebb00c9c8865ad2cbfed279942611a2e8f Add full BG with the parameters of fig3 and 4 in Parent 1992b model Weiwei Ai 2024-04-10 remove temp files in V2 https://staging.physiomeproject.org/workspace/b65/@@file/3251b8af5a73e1df4060ff94082d34948f583136 remove temp files in V2 Weiwei Ai 2024-04-08 clean up; correct the cell volume to 0.09 pL; remove the param convertion equations in cellml; use python to do the conversion; https://staging.physiomeproject.org/workspace/b65/@@file/d36dca3e6ed80f08a478e14a9be7695786950d7e clean up; correct the cell volume to 0.09 pL; remove the param convertion equations in cellml; use python to do the conversion; Weiwei Ai 2024-04-08 correct the units; Add the model with the parameters converted from kinetic models https://staging.physiomeproject.org/workspace/b65/@@file/cc67d4f5117e49e550b0fed51e40854609d05eae correct the units; Add the model with the parameters converted from kinetic models Weiwei Ai 2024-04-06