https://staging.physiomeproject.org/workspace/be4 en-us Kobro-Flatmoen & Omholt 2024 Intraneuronal binding of amyloid beta with reelin - implications for the onset of Alzheimer’s disease. CellML model derived from Kabro-Flatmoen & Omholt (2024), initial CellML implementation by Peter Hunter. Use the latest exposure button above to see documentation on how to best explore this workspace. Adding instructions for launching the notebook using macOS https://staging.physiomeproject.org/workspace/be4/@@file/0f278fd7ed10438120e9c7b5767e104e71530a17 Adding instructions for launching the notebook using macOS David Nickerson 2024-11-14 Update figure numbering based on manuscript revisions https://staging.physiomeproject.org/workspace/be4/@@file/59579cf633479bb2663e8a00f1f5b20258b0be5c Update figure numbering based on manuscript revisions David Nickerson 2024-11-13 Corrections to the HTML code https://staging.physiomeproject.org/workspace/be4/@@file/eaf7b0ff002c8a69d5cb3d151d6144326a59a4e4 Corrections to the HTML code David Nickerson 2024-10-16 Adding an initial documentation page to use in creating an exposure https://staging.physiomeproject.org/workspace/be4/@@file/bbe4b985a2f02d850a8525ebcc9bed9a11c8562a Adding an initial documentation page to use in creating an exposure David Nickerson 2024-10-15 adding Jupyter notebook that reproduces results from revised manuscript and generated plot images https://staging.physiomeproject.org/workspace/be4/@@file/0a2dc7c09491eb537839ca3b637671220ddfeae8 adding Jupyter notebook that reproduces results from revised manuscript and generated plot images David Nickerson 2024-10-15 adding ignore file to ignore jupyter checkpoints https://staging.physiomeproject.org/workspace/be4/@@file/0e58c067a6f4be20a26c848b388cf8922b0eea72 adding ignore file to ignore jupyter checkpoints David Nickerson 2024-10-15 Tweaking figure 5 model and simulation experiment to match revised manuscript https://staging.physiomeproject.org/workspace/be4/@@file/daaa0d50a81d9c1e50ea5139e20555ae6f66f44a Tweaking figure 5 model and simulation experiment to match revised manuscript David Nickerson 2024-10-15 reduce the number of points to improve performance in jupyter notebook https://staging.physiomeproject.org/workspace/be4/@@file/8fac2a0453e8461244983dcb0f9b615a95f6b54e reduce the number of points to improve performance in jupyter notebook David Nickerson 2024-10-07 Update value of alpha_baseline in Re+ neurons https://staging.physiomeproject.org/workspace/be4/@@file/a091d4856e119ac779a1c32cd97919125ebd78e0 Update value of alpha_baseline in Re+ neurons David Nickerson 2024-10-07 remove old versions of the model https://staging.physiomeproject.org/workspace/be4/@@file/fd5921ed3b51ddc87fed1f8562e45fa34f9778f5 remove old versions of the model David Nickerson 2024-09-30 Adding steadystate model and configuration to reproduce figure 5. https://staging.physiomeproject.org/workspace/be4/@@file/b26c22572cfc7416239226346d239a1c67d42c1d Adding steadystate model and configuration to reproduce figure 5. David Nickerson 2024-09-30 rename alpha_initial to alpha_baseline https://staging.physiomeproject.org/workspace/be4/@@file/f18b8851776399963e1272fcbf193b22c35a6c39 rename alpha_initial to alpha_baseline David Nickerson 2024-09-30 Creating a common model and parameter sets that are reused to produce outputs for figures 1-4 in a single model https://staging.physiomeproject.org/workspace/be4/@@file/c387870ec31681cb45c3dd50249ef7179da91e50 Creating a common model and parameter sets that are reused to produce outputs for figures 1-4 in a single model David Nickerson 2024-09-30 Adding variant used in Figure 3 https://staging.physiomeproject.org/workspace/be4/@@file/0cd32f611d7f466e4842fa9fabd2bc80f6e2fe21 Adding variant used in Figure 3 David Nickerson 2024-09-30 Adding variant for Re+alECLII neurons in Figure 2 https://staging.physiomeproject.org/workspace/be4/@@file/81ddf848bab39d0a740b3c121561d7788dfc3a7f Adding variant for Re+alECLII neurons in Figure 2 David Nickerson 2024-09-30 Tweak simulator settings to make sure infection period correctly detected https://staging.physiomeproject.org/workspace/be4/@@file/2a6647f525cd81a2c2c0d87e2298128a2ad7a86e Tweak simulator settings to make sure infection period correctly detected David Nickerson 2024-09-30 Update to use 'constant' steady-state values to initialise state variables https://staging.physiomeproject.org/workspace/be4/@@file/af496dbd32b703d0cb697cba41c8d6cf1a104a0e Update to use 'constant' steady-state values to initialise state variables David Nickerson 2024-09-30 update units to match manuscript definition https://staging.physiomeproject.org/workspace/be4/@@file/15567051f41c3751e79a9721ff8c7b039139f265 update units to match manuscript definition David Nickerson 2024-09-30 Adding initial CellML implementation of the model. https://staging.physiomeproject.org/workspace/be4/@@file/adfb0a7eedf8d5b2fb3f3c4a30f37e0ef93250d3 Adding initial CellML implementation of the model. David Nickerson 2024-09-30