- Author:
- Shelley Fong <sfon036@UoA.auckland.ac.nz>
- Date:
- 2025-05-20 10:44:42+12:00
- Desc:
- Merge with protein knowqledge and adding anno
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/c98/rawfile/3066609b79236ea2c20e927d9ecf4659fa14ef22/params_BG.cellml
<?xml version='1.0' encoding='UTF-8'?>
<model name="params_BG" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:xlink="http://www.w3.org/1999/xlink">
<import xlink:href="units/units.cellml">
<units name="per_fmol" units_ref="per_fmol"/>
<units name="C_per_mol" units_ref="C_per_mol"/>
<units name="fmol_per_s" units_ref="fmol_per_s"/>
<units name="fmol" units_ref="fmol"/>
<units name="J_per_K_mol" units_ref="J_per_K_mol"/>
<units name="mM" units_ref="mM"/>
<units name="pL" units_ref="pL"/>
<units name="fA" units_ref="fA"/>
<units name="fF" units_ref="fF"/>
</import>
<units name="volt_per_s">
<unit exponent="-1" units="second"/>
<unit units="volt"/>
</units>
<component name="params_BG">
<variable initial_value="8.31" name="R" public_interface="out" units="J_per_K_mol"/>
<variable initial_value="293" name="T" public_interface="out" units="kelvin"/>
<variable initial_value="96485" name="F" public_interface="out" units="C_per_mol"/>
<variable initial_value="1e-08" name="K_Cai" public_interface="out" units="per_fmol"/>
<variable name="q_Cai" public_interface="out" units="fmol"/>
<variable initial_value="1e-08" name="K_Cao" public_interface="out" units="per_fmol"/>
<variable name="q_Cao" public_interface="out" units="fmol"/>
<variable initial_value="1e-08" name="K_Pi" public_interface="out" units="per_fmol"/>
<variable name="q_Pi" public_interface="out" units="fmol"/>
<variable initial_value="1e-08" name="K_ATPi" public_interface="out" units="per_fmol"/>
<variable name="q_ATPi" public_interface="out" units="fmol"/>
<variable initial_value="1e-08" name="K_ADPi" public_interface="out" units="per_fmol"/>
<variable name="q_ADPi" public_interface="out" units="fmol"/>
<variable initial_value="1e-06" name="K_Hi" public_interface="out" units="per_fmol"/>
<variable name="q_Hi" public_interface="out" units="fmol"/>
<variable initial_value="1e-06" name="K_Ho" public_interface="out" units="per_fmol"/>
<variable name="q_Ho" public_interface="out" units="fmol"/>
<variable initial_value="1" name="K_1" public_interface="out" units="per_fmol"/>
<variable initial_value="1" name="q_init_1" public_interface="out" units="fmol"/>
<variable initial_value="1" name="K_2" public_interface="out" units="per_fmol"/>
<variable initial_value="1" name="q_init_2" public_interface="out" units="fmol"/>
<variable initial_value="1" name="K_3" public_interface="out" units="per_fmol"/>
<variable initial_value="1" name="q_init_3" public_interface="out" units="fmol"/>
<variable initial_value="1" name="K_4" public_interface="out" units="per_fmol"/>
<variable initial_value="1" name="q_init_4" public_interface="out" units="fmol"/>
<variable initial_value="1" name="K_5" public_interface="out" units="per_fmol"/>
<variable initial_value="1" name="q_init_5" public_interface="out" units="fmol"/>
<variable initial_value="1" name="K_6" public_interface="out" units="per_fmol"/>
<variable initial_value="1" name="q_init_6" public_interface="out" units="fmol"/>
<variable name="V0_Vm" public_interface="out" units="volt"/>
<variable initial_value="1" name="z_zf1" public_interface="out" units="dimensionless"/>
<variable initial_value="1" name="z_zr1" public_interface="out" units="dimensionless"/>
<variable initial_value="1" name="z_zf2" public_interface="out" units="dimensionless"/>
<variable initial_value="1" name="z_zr2" public_interface="out" units="dimensionless"/>
<variable initial_value="1" name="kappa_r1" public_interface="out" units="fmol_per_s"/>
<variable initial_value="1" name="kappa_r2" public_interface="out" units="fmol_per_s"/>
<variable initial_value="1" name="kappa_r3" public_interface="out" units="fmol_per_s"/>
<variable initial_value="1" name="kappa_r4" public_interface="out" units="fmol_per_s"/>
<variable initial_value="1" name="kappa_r5" public_interface="out" units="fmol_per_s"/>
<variable initial_value="1" name="kappa_r6" public_interface="out" units="fmol_per_s"/>
<variable initial_value="1" name="kappa_r7" public_interface="out" units="fmol_per_s"/>
<variable initial_value="20" name="Cai" units="mM"/>
<variable initial_value="100" name="Cao" units="mM"/>
<variable initial_value="10e-3" name="Hi" units="mM"/>
<variable initial_value="1e-12" name="Ho" units="mM"/>
<variable initial_value="1e-12" name="Pi" units="mM"/>
<variable initial_value="1e-12" name="ATPi" units="mM"/>
<variable initial_value="1e-12" name="ADPi" units="mM"/>
<variable initial_value="8.5e5" name="V_i" units="pL"/>
<variable initial_value="8.5e5" name="V_o" units="pL"/>
<variable name="t" public_interface="out" units="second"/>
<variable initial_value="-0.05" name="V_E" public_interface="out" units="volt"/>
<variable initial_value="1e-3" name="dt" units="second"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>V0_Vm</ci>
<ci>V_E</ci>
</apply>
<apply>
<eq/>
<ci>q_Cai</ci>
<apply>
<times/>
<ci>Cai</ci>
<ci>V_i</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>q_Cao</ci>
<apply>
<times/>
<ci>Cao</ci>
<ci>V_o</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>q_Pi</ci>
<apply>
<times/>
<ci>Pi</ci>
<ci>V_o</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>q_ATPi</ci>
<apply>
<times/>
<ci>ATPi</ci>
<ci>V_o</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>q_ADPi</ci>
<apply>
<times/>
<ci>ADPi</ci>
<ci>V_o</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>q_Hi</ci>
<apply>
<times/>
<ci>Hi</ci>
<ci>V_i</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>q_Ho</ci>
<apply>
<times/>
<ci>Ho</ci>
<ci>V_o</ci>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>V_E</ci>
</apply>
<cn cellml:units="volt_per_s">0</cn>
</apply>
</math>
</component>
</model>
