Location: Cooling, Hunter, Crampin, Cellml, 2008 @ 990b7b2b938c / PIP2.cellml

Author:
Tommy Yu <tommy.yu@auckland.ac.nz>
Date:
2010-08-25 17:02:03+12:00
Desc:
e-notation fix
Permanent Source URI:
https://staging.physiomeproject.org/workspace/cooling_hunter_crampin_CellML_2008/rawfile/990b7b2b938c15874ac605e07b65f7c0d924ae67/PIP2.cellml
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<?xml version="1.0" encoding="iso-8859-1"?>
<model
    name="PIP2"
    cmeta:id="PIP2"
    xmlns="http://www.cellml.org/cellml/1.1#"
    xmlns:cellml="http://www.cellml.org/cellml/1.1#"
    xmlns:cmeta="http://www.cellml.org/metadata/1.0#">
    
<rdf:RDF
    xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
    xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
    xmlns:bqs="http://www.cellml.org/bqs/1.0#"
    xmlns:dc="http://purl.org/dc/elements/1.1/"
    xmlns:dcterms="http://purl.org/dc/terms/"
    xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
    <rdf:Description rdf:about="#PIP2">
        <dc:creator rdf:parseType="Resource">
            <vCard:N rdf:parseType="Resource">
                <vCard:Family>Cooling</vCard:Family>
                <vCard:Given>Michael</vCard:Given>
            </vCard:N>
            <vCard:EMAIL rdf:parseType="Resource">
                <rdf:value>m.cooling@auckland.ac.nz</rdf:value>
                <rdf:type rdf:resource="http://imc.org/vCard/3.0#internet" />
            </vCard:EMAIL>
        </dc:creator>

        <dc:title>Cooling's PIP2 Module</dc:title>
    </rdf:Description>
</rdf:RDF> 
<!--
*******************************************************
***         U   N   I   T   S                       ***
*******************************************************
-->    
<units name="s">
    <unit units="second" />
</units>

<units name="um2">
    <unit prefix="micro" units="meter" exponent="2" />
</units>

<units name="per_um2">
    <unit units="um2" exponent="-1" />
</units>

<units name="uM_um2">
    <unit units="um2" />
    <unit units="uM"/>
</units>

<units name="per_um2_per_s">
    <unit units="um2" exponent="-1" />
    <unit units="s" exponent="-1" />
</units>

<units name="uM">
    <unit prefix="micro" units="mole" />
    <unit units="liter" exponent="-1" />
</units>

<units name="per_s">
    <unit units="s" exponent="-1" />
</units> 
<!--
********************************************************
***    C   O   M   P   O   N   E   N   T   S         ***
********************************************************
-->
<component name="PIP2">
    <variable name="Eb" units="per_um2" public_interface="in"/>
    <variable name="Es" units="per_um2" public_interface="in"/> 
    <variable name="Cpc" units="uM_um2" private_interface="in" />
    <variable name="J1" units="per_um2_per_s" public_interface="out"/>
    <variable name="J2" units="per_um2_per_s" public_interface="out"/>
    <variable name="PIP2" initial_value="4000" units="per_um2" />
    <variable name="kf1" initial_value="0.444" units="per_s" />
    <variable name="Km1" initial_value="19.8" units="uM" />
    <variable name="kf2" initial_value="3.8" units="per_s" />
    <variable name="Km2" initial_value="5.00" units="uM" /> 

    <math xmlns="http://www.w3.org/1998/Math/MathML"
        cmeta:id="J1">
        <apply id="J1_eq">
            <eq/> 
            <ci>J1</ci>    
            <apply>
                <divide />
                <apply>
                    <times />
                    <ci>kf1</ci>
                    <ci>Eb</ci>
                    <ci>PIP2</ci>
                </apply>
                <apply>
                    <plus />
                    <apply>
                        <divide />
                        <ci>Km1</ci>
                        <ci>Cpc</ci>
                    </apply>
                    <ci>PIP2</ci>
                </apply>
            </apply>
        </apply>
    </math>

    <math xmlns="http://www.w3.org/1998/Math/MathML"
        cmeta:id="J2">
        <apply id="J2_eq">
            <eq/> 
            <ci>J2</ci>  
            <apply>
                <divide />
                <apply>
                    <times />
                    <ci>kf2</ci>
                    <ci>Es</ci>
                    <ci>PIP2</ci>
                </apply>
                <apply>
                    <plus />
                    <apply>
                        <divide />
                        <ci>Km2</ci>
                        <ci>Cpc</ci>
                    </apply>
                    <ci>PIP2</ci>
                </apply>
            </apply>
        </apply>
    </math>
</component>

</model>