- Author:
- 0Huitzil <frcastaneda@protonmail.com>
- Date:
- 2025-08-27 16:48:14+12:00
- Desc:
- Added STL and VTK files
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/d48/rawfile/dc723ff1d57f3f9e6c1c7a57c0c075e6d11a0a1d/OrganScaffold-settings.json
{
"general_settings": {},
"id": "scaffold creator settings",
"metadata": {
"annotations": [
{
"id": "ILX:0794592",
"name": "C1 spinal nerve"
},
{
"id": "ILX:0794595",
"name": "C2 spinal nerve"
},
{
"id": "ILX:0794598",
"name": "C3 spinal nerve"
},
{
"id": "ILX:0794601",
"name": "C4 spinal nerve"
},
{
"id": "ILX:0794604",
"name": "C5 spinal nerve"
},
{
"id": "ILX:0794607",
"name": "C6 spinal nerve"
},
{
"id": "ILX:0794610",
"name": "C7 spinal nerve"
},
{
"id": "ILX:0794613",
"name": "C8 spinal nerve"
},
{
"id": "ILX:0788972",
"name": "L1 spinal nerve"
},
{
"id": "ILX:0786362",
"name": "L2 spinal nerve"
},
{
"id": "ILX:0789374",
"name": "L3 spinal nerve"
},
{
"id": "ILX:0788896",
"name": "L4 spinal nerve"
},
{
"id": "ILX:0787261",
"name": "L5 spinal nerve"
},
{
"id": "ILX:0790504",
"name": "S1 spinal nerve"
},
{
"id": "ILX:0787528",
"name": "S2 spinal nerve"
},
{
"id": "ILX:0791971",
"name": "S3 spinal nerve"
},
{
"id": "ILX:0792327",
"name": "S4 spinal nerve"
},
{
"id": "ILX:0787432",
"name": "S5 spinal nerve"
},
{
"id": "ILX:0738397",
"name": "T1 spinal nerve"
},
{
"id": "ILX:0792933",
"name": "T10 spinal nerve"
},
{
"id": "ILX:0791454",
"name": "T11 spinal nerve"
},
{
"id": "ILX:0791046",
"name": "T12 spinal nerve"
},
{
"id": "ILX:0739243",
"name": "T2 spinal nerve"
},
{
"id": "ILX:0739246",
"name": "T3 spinal nerve"
},
{
"id": "ILX:0784755",
"name": "T4 spinal nerve"
},
{
"id": "ILX:0792589",
"name": "T5 spinal nerve"
},
{
"id": "ILX:0791122",
"name": "T6 spinal nerve"
},
{
"id": "ILX:0789008",
"name": "T7 spinal nerve"
},
{
"id": "ILX:0792754",
"name": "T8 spinal nerve"
},
{
"id": "ILX:0789545",
"name": "T9 spinal nerve"
},
{
"id": "UBERON:0000962",
"name": "cervical spinal nerve"
},
{
"id": "UBERON:0009629",
"name": "coccygeal nerve"
},
{
"id": "",
"name": "core"
},
{
"id": "UBERON:0000044",
"name": "dorsal root ganglion"
},
{
"id": "UBERON:0002261",
"name": "dorsal root of spinal cord"
},
{
"id": "",
"name": "left"
},
{
"id": "UBERON:0009624",
"name": "lumbar nerve"
},
{
"id": "",
"name": "right"
},
{
"id": "UBERON:0009625",
"name": "sacral nerve"
},
{
"id": "",
"name": "shell"
},
{
"id": "UBERON:0001780",
"name": "spinal nerve"
},
{
"id": "UBERON:0003726",
"name": "thoracic nerve"
},
{
"id": "UBERON:0002260",
"name": "ventral root of spinal cord"
}
]
},
"scaffold_settings": {
"deleteElementRanges": "",
"scaffoldPackage": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Base parameter set": "Human whole spine 1",
"Number of elements across core box minor": 2,
"Number of elements across core transition": 1,
"Number of elements along dorsal root beside DRG": 1,
"Number of elements along dorsal root ganglion": 3,
"Number of elements along nerve root": 3,
"Number of elements along ventral root": 5,
"Number of elements around spinal nerve": 8,
"Number of elements through shell": 1,
"Show trim surfaces": false,
"Spinal nerve network layout": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Base parameter set": "Human whole spine 1",
"Define inner coordinates": true,
"Distance between bifurcation to spinal cord": 0.1,
"Dorsal root diameter": 0.1,
"Dorsal root ganglion thickest diameter": 0.18,
"Inner proportion default": 0.75,
"Pitch angle degrees": 10.0,
"Spinal cord major diameter": 1.5,
"Spinal cord minor diameter": 0.5,
"Spinal nerve root diameter": 0.1,
"Spinal nerve root length": 0.5,
"Structure": "1-2.1,2.2-3-4-5,2.3-6-7, 7-8-9-10-11, 11-12-13,14-15.1,15.2-16-17-18,15.3-19-20, 20-21-22-23-24, 24-25-26",
"Ventral root diameter": 0.1
},
"scaffoldTypeName": "1D Human Spinal Nerve Network Layout 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
},
"Use Core": true
},
"scaffoldTypeName": "3D Spinal Nerve 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
}
},
"segmentation_data_settings": {},
"version": "1.0.0"
}
