- Author:
- 0Huitzil <frcastaneda@protonmail.com>
- Date:
- 2025-08-27 15:24:20+12:00
- Desc:
- Updated annotation terms and updated visualization settings
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/d4e/rawfile/b96318b6bd992374ba4c39e249229298252bc8d4/OrganScaffold-settings.json
{
"general_settings": {},
"id": "scaffold creator settings",
"metadata": {
"annotations": [
{
"id": "",
"name": "core"
},
{
"id": "UBERON:0000375",
"name": "mandibular nerve"
},
{
"id": "UBERON:0000377",
"name": "maxillary nerve"
},
{
"id": "UBERON:0000348",
"name": "ophthalmic nerve"
},
{
"id": "",
"name": "shell"
},
{
"id": "UBERON:0001675",
"name": "trigeminal ganglion"
},
{
"id": "UBERON:0001645",
"name": "trigeminal nerve"
},
{
"id": "UBERON:0004673",
"name": "trigeminal nerve root"
}
]
},
"scaffold_settings": {
"deleteElementRanges": "",
"scaffoldPackage": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Base parameter set": "Human 1",
"Number of elements across core box minor": 2,
"Number of elements across core transition": 1,
"Number of elements along mandibular nerve": 3,
"Number of elements along maxillary nerve": 3,
"Number of elements along nerve root": 3,
"Number of elements along ophthalmic nerve": 3,
"Number of elements along trigeminal ganglion": 2,
"Number of elements around trigeminal nerve": 8,
"Number of elements through shell": 1,
"Show trim surfaces": false,
"Trigeminal nerve network layout": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Base parameter set": "Default",
"Define inner coordinates": true,
"Inner proportion default": 0.75,
"Mandibular nerve end width": 1.0,
"Mandibular nerve length": 1.5,
"Mandibular nerve start width": 1.6,
"Maxillary nerve end width": 0.25,
"Maxillary nerve length": 3.0,
"Maxillary nerve start width": 2.0,
"Ophthalmic nerve end width": 0.6,
"Ophthalmic nerve length": 3.0,
"Ophthalmic nerve start width": 1.0,
"Structure": "1-2-3,3-4-5.1,5.2-6-7-8-9,5.3-10-11-12-13,5.4-14-15-16-17",
"Trigeminal ganglion length": 2.0,
"Trigeminal ganglion width": 3.5,
"Trigeminal nerve root length": 3.0,
"Trigeminal nerve root width": 1.2,
"Trigeminal nerve thickness": 0.5
},
"scaffoldTypeName": "1D Human Trigeminal Nerve Network Layout 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
},
"Use Core": true
},
"scaffoldTypeName": "3D Trigeminal Nerve 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
}
},
"segmentation_data_settings": {},
"version": "1.0.0"
}
