Location: BG Epithelial Transport @ ac7c68415948 / simulation.json

Author:
David Nickerson <david.nickerson@gmail.com>
Date:
2025-08-26 23:21:18+12:00
Desc:
adding new image highlighting BCs and using it in the documentation.
Permanent Source URI:
https://staging.physiomeproject.org/workspace/d5e/rawfile/ac7c68415948c894b4799136c905cfbbbbd8f62b/simulation.json

{
    "input": [
      {
        "defaultValue": 2000,
        "id": "kappa_K",
        "name": "κ_K (C/J/s)",
        "maximumValue": 5000,
        "minimumValue": 10
      },
      {
        "defaultValue": 100,
        "id": "kappa_NKCC1",
        "name": "κ_NKCC1 (mmol/s)",
        "maximumValue": 1000,
        "minimumValue": 1
      },
      {
        "defaultValue": 100,
        "id": "kappa_KCC1",
        "name": "κ_KCC1 (mmol/s)",
        "maximumValue": 1000,
        "minimumValue": 1
      }
    ],
    "output": {
      "data": [
        {
          "id": "t",
          "name": "main/t"
        },
        {
          "id": "c_Na_epi",
          "name": "main/c_Na_epi"
        },
        {
          "id": "c_Glc_epi",
          "name": "main/c_Glc_epi"
        },
        {
          "id": "v_GLUT2",
          "name": "main/v_GLUT2"
        },
        {
          "id": "v_SGLT1",
          "name": "main/v_SGLT1"
        },
        {
          "id": "u_e",
          "name": "main/u_e"
        }
      ],
      "plots": [
        {
          "yAxisTitle": "[Na]epi (mM)",
          "yValue": "c_Na_epi",
          "xAxisTitle": "Time (s)",
          "xValue": "t"
        },
        {
          "yAxisTitle": "[Glc]epi (mM)",
          "yValue": "c_Glc_epi",
          "xAxisTitle": "Time (s)",
          "xValue": "t"
        },
        {
          "yAxisTitle": "v_GLUT2 (mol/s)",
          "yValue": "v_GLUT2",
          "xAxisTitle": "Time (s)",
          "xValue": "t"
        },
        {
          "yAxisTitle": "u_e (J/C)",
          "yValue": "u_e",
          "xAxisTitle": "Time (s)",
          "xValue": "t"
        }
      ]
    },
    "parameters": [
      {
        "name": "main/kappa_K",
        "value": "kappa_K"
      },
      {
        "name": "main/kappa_NKCC1",
        "value": "kappa_NKCC1 / 1000"
      },
      {
        "name": "main/kappa_KCC1",
        "value": "kappa_KCC1 / 1000"
      }
    ]
  }