Location: SERCA Higgins, 2006 Bond Graph (v2) @ b8a595ae6aec / README.txt

Author:
smeans <s.means@auckland.ac.nz>
Date:
2025-11-05 15:56:07+13:00
Desc:
added cellml dependencies
Permanent Source URI:
https://staging.physiomeproject.org/workspace/d7e/rawfile/b8a595ae6aec59de8bee1394ede307a7b478b7dc/README.txt
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Files:

Parameter fit n find

	higgins_serca_bg_parms_wphosphate_t1.m

		matlab script converting kinetic parameters from Higgins, 2006 to BG form


	higgins_serc_fit_ktilde_phosph_s_v1
		matlab function computing analytic steady-state flux for fitting (if desired); includes phosphates



CellML

	higgins2006_serca_wphosphate.cllml

	BG model of Higgins, 2006 SERCA

		run to ~t = 1000 seconds to see steady-state
		ratios of ca_i and ca_er (q_Ca_ratio) provided for comparison with analytical value

	
BG schematic

	higgins2006_serca_bg_schematic1

	Note annotations to match Higgins, 2006 Fig. 2 and BG schematic