- Author:
- mlin865 <mlin865@aucklanduni.ac.nz>
- Date:
- 2025-11-10 10:01:11+13:00
- Desc:
- Add organScaffold.exf
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/d82/rawfile/782cf88dfbd22445d76e158dad1639a3a8aba2c8/OrganScaffold-settings.json
{
"general_settings": {},
"id": "scaffold creator settings",
"metadata": {
"annotations": [
{
"id": "UBERON:0009853",
"name": "body of uterus"
},
{
"id": "",
"name": "dorsal uterus"
},
{
"id": "UBERON:0013760",
"name": "external cervical os"
},
{
"id": "ILX:0743898",
"name": "fundus of uterus"
},
{
"id": "UBERON:0013759",
"name": "internal cervical os"
},
{
"id": "",
"name": "junction of left round ligament with uterus"
},
{
"id": "",
"name": "junction of left uterosacral ligament with uterus"
},
{
"id": "",
"name": "junction of right round ligament with uterus"
},
{
"id": "",
"name": "junction of right uterosacral ligament with uterus"
},
{
"id": "",
"name": "left broad ligament of uterus"
},
{
"id": "",
"name": "left lumen of uterus and cervix"
},
{
"id": "",
"name": "left lumen of uterus, cervix and vagina"
},
{
"id": "UBERON:0001303",
"name": "left oviduct"
},
{
"id": "",
"name": "left serosa of uterus and vagina"
},
{
"id": "",
"name": "left transverse cervical ligament"
},
{
"id": "",
"name": "left uterus"
},
{
"id": "",
"name": "lumen of body of uterus"
},
{
"id": "",
"name": "lumen of fundus of uterus"
},
{
"id": "",
"name": "lumen of left oviduct"
},
{
"id": "",
"name": "lumen of right oviduct"
},
{
"id": "",
"name": "lumen of uterus and cervix"
},
{
"id": "",
"name": "lumen of uterus, cervix and vagina"
},
{
"id": "UBERON:0001296",
"name": "myometrium"
},
{
"id": "ILX:0743760",
"name": "pubocervical ligament"
},
{
"id": "",
"name": "right broad ligament of uterus"
},
{
"id": "",
"name": "right lumen of uterus and cervix"
},
{
"id": "",
"name": "right lumen of uterus, cervix and vagina"
},
{
"id": "UBERON:0001302",
"name": "right oviduct"
},
{
"id": "",
"name": "right serosa of uterus and vagina"
},
{
"id": "",
"name": "right transverse cervical ligament"
},
{
"id": "",
"name": "right uterus"
},
{
"id": "",
"name": "serosa of body of uterus"
},
{
"id": "",
"name": "serosa of fundus of uterus"
},
{
"id": "",
"name": "serosa of left oviduct"
},
{
"id": "",
"name": "serosa of right oviduct"
},
{
"id": "UBERON:0001297",
"name": "serosa of uterus"
},
{
"id": "",
"name": "serosa of uterus and vagina"
},
{
"id": "",
"name": "serosa of vagina"
},
{
"id": "UBERON:0013769",
"name": "uterine cavity"
},
{
"id": "UBERON:0000002",
"name": "uterine cervix"
},
{
"id": "UBERON:0000995",
"name": "uterus"
},
{
"id": "UBERON:0000996",
"name": "vagina"
},
{
"id": "UBERON:0012317",
"name": "vagina orifice"
},
{
"id": "UBERON:0011894",
"name": "vaginal canal"
},
{
"id": "",
"name": "ventral uterus"
}
]
},
"scaffold_settings": {
"deleteElementRanges": "",
"scaffoldPackage": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Base parameter set": "Human Pregnant 1",
"Network layout": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Angle of anteversion degrees": 70.0,
"Base parameter set": "Human Pregnant 1",
"Body length": 14.0,
"Cervical depth around external os": 3.0,
"Cervical depth around internal os": 3.8,
"Cervical length": 1.0,
"Cervical width around external os": 5.0,
"Cervical width around internal os": 5.5,
"Define inner coordinates": true,
"Fundus depth between oviducts/uterine horns": 12.0,
"Fundus width between oviducts/uterine horns": 12.0,
"Inner proportion body": 0.95,
"Inner proportion cervix": 0.15,
"Inner proportion oviduct/uterine horn": 0.5,
"Inner proportion vagina": 0.8,
"Oviduct/uterine horn diameter": 0.35,
"Oviduct/uterine horn length": 10.0,
"Structure": "1-2-3-4-5-6-7-8-9-31.1,10-11-12-13-14-15-16-17-18-31.2,#-19-20-21-22-23-24-25-26-27-28-29-30-31.3,31.4-32-33-34-35-36-37-38-39-40-41-42-43,43-44,44-45-46-47-48",
"Vagina depth around vagina orifice": 1.25,
"Vagina length": 10.0,
"Vagina width around vagina orifice": 1.25
},
"scaffoldTypeName": "1D Uterus Network Layout 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
},
"Number of elements along body": 5,
"Number of elements along cervix": 1,
"Number of elements along oviduct/uterine horn": 6,
"Number of elements along vagina": 4,
"Number of elements around": 20,
"Number of elements around oviduct/uterine horn": 8,
"Number of elements through wall": 1,
"Refine": false,
"Refine number of elements along": 4,
"Refine number of elements around": 4,
"Refine number of elements through wall": 1,
"Show trim surfaces": false,
"Use linear through wall": true
},
"scaffoldTypeName": "3D Uterus 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
}
},
"segmentation_data_settings": {},
"version": "1.0.0"
}
