Location: Karagiannis, Popel, 2004 @ 5f432985f980 / karagiannis_popel_2004.cellml

Author:
Catherine Lloyd <c.lloyd@auckland.ac.nz>
Date:
2009-09-30 08:44:06+13:00
Desc:
Curated model.
Permanent Source URI:
https://staging.physiomeproject.org/workspace/karagiannis_popel_2004/rawfile/5f432985f9802b7b5b6d6c69cbacb1dd3ed95d3b/karagiannis_popel_2004.cellml

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<!--  FILE :  karagiannis_model_2004.xml

CREATED :  10th December 2007

LAST MODIFIED : 10th December 2007

AUTHOR :  Catherine Lloyd
          Bioengineering Institute
          The University of Auckland
          
MODEL STATUS :  This model conforms to the CellML 1.1 Specification.

DESCRIPTION :  This file contains a CellML description of Karagiannis and Popel's 2004 mathematical model of collagen type I proteolysis by matrix metalloproteinase (MMP) 2 and membrane type I MMP during the migration of a tip endothelial cell.

CHANGES:  
  
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<article>
  <articleinfo>
  <title>A theoretical model of type I collagen proteolysis by matrix metalloproteinase (MMP) 2 and membrane type 1 MMP in the presence of tissue inhibitor of metalloproteinase 2</title>
  <author>
    <firstname>Catherine</firstname>
          <surname>Lloyd</surname>
    <affiliation>
      <shortaffil>Bioengineering Institute, University of Auckland</shortaffil>
    </affiliation>
  </author>
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  <section id="sec_status">
    <title>Model Status</title>
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        This version of the model has been checked in COR and PCEnv and it runs to replicate the published results.  The model is valid CellML and has consistent units.
    </para>
  </section>
  <sect1 id="sec_structure">
<title>Model Structure</title>

<para>
The formation of new biological vessels requires the coordinated assembly of a proliferating syncytium of endothelial cells (EC) at different developmental stages.  Angiogenesis may also be an essential mechanism of blood vessel remodelling which occurs during a diverse range of physiological processes; including tissue regeneration following injury and new vessel formation during muscle exercise.  It can also occur under pathological conditions such as atherosclerosis and the vascularisation of cancerous tumours.
</para>

<para>
Matrix metalloproteinases (MMPs) are a family of enzymes responsible for the proteolytic processing of extracellular matrix (ECM) structural proteins.  During angiogenesis MMPs are expressed by a single endothelial cell at the tip of the new vessel.  These enzymes manifest a proteolytic activity that allows the cells of the new vessle to penetrate the ECM.  In the mathematical model presented here, Karagiannis and Popel investigate the proteolytic potential of such a tip endothelial cell.  The model authors suggest this model provides a foundation for future quantitative studies of angiogenesis in ECMs of different compositions.  The model is described in more detail in the figure below:
</para>

<para>
The complete original paper reference is cited below:
</para>

<para>
A theoretical model of type I collagen proteolysis by matrix metalloproteinase (MMP) 2 and membrane type 1 MMP in the presence of tissue inhibitor of metalloproteinase 2, Emmanouil D. Karagiannis and Aleksander S. Popel, 2004, <emphasis>The Journal of Biological Chemistry</emphasis>, 279, 39105-39114. <ulink url="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;list_uids=15252025&amp;dopt=Abstract">PubMed ID: 15252025</ulink> 
</para>


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<caption>A schematic diagram of the signalling pathway.</caption>
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            A theoretical model of type I collagen proteolysis by matrix metalloproteinase (MMP) 2 and membrane type 1 MMP in the presence of tissue inhibitor of metalloproteinase 2
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    <bqs:first_page>39105</bqs:first_page>
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        Karagiannis and Popel's 2004 mathematical model of collagen type I proteolysis by matrix metalloproteinase (MMP) 2 and membrane type I MMP during the migration of a tip endothelial cell.
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    <vCard:FN>Catherine Lloyd</vCard:FN>
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          The CellML model was curated to ensure the results it generates are the same as those generated by the original published model.  A full desceription of the curation comments can be found in the associated file "Explanations".
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          <dcterms:W3CDTF>2009-09-30</dcterms:W3CDTF>
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