https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996 en-us Mackenzie, Loo, Panayotova-Heiermann and Wright, 1996 adding protein module keyword https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/9e1413fd915169aa9390c97e20c5e3884a020916 adding protein module keyword David Nickerson 2016-03-24 need to fix bug in figure-04.xml https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/f48254083108d09d514ce3ae66eec5f50025d387 need to fix bug in figure-04.xml Dewan Mahabub Sarwar 2015-10-06 added figure-04.xml https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/2e24a3eb62d9b6d746c7af61f6adf4f6ae642bc7 added figure-04.xml Dewan Mahabub Sarwar 2015-10-05 Merge branch 'master' of https://models.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996 https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/c853ba298420266fdc41b1a53ac8f5b9722a418c Merge branch 'master' of https://models.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996 David Nickerson 2015-07-29 adding a preliminary documentation page which includes the previous tmp-doc generated documentation and some annotations https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/b0a32e5099ae46cec773763490f3c6a48d4a2d4c adding a preliminary documentation page which includes the previous tmp-doc generated documentation and some annotations David Nickerson 2015-02-27 adding an initial OMEX Manifest file used by my GMS to find important files in this workspace https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/54bcbc95f6c633a9ef6f9b4cdf24c105a069e70f adding an initial OMEX Manifest file used by my GMS to find important files in this workspace David Nickerson 2013-01-16 adding initial SED-ML which describes the simulation experiment presented in Figure 3 (a,b,c,d) of the Mackenzie et al 1996 paper. https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/641d7f5fa011b507d9fdc5348276d6d2f18014c3 adding initial SED-ML which describes the simulation experiment presented in Figure 3 (a,b,c,d) of the Mackenzie et al 1996 paper. David Nickerson 2013-01-16 stripping out the RDF from the model (including the graphing and simulation metadata) using rdfExtractor; adding the RDF in a new file; adding the CSim summary description for reproducing the simulations and graphs from the original graphing and simulation metadata. https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/b65c9636345825e14b22a616df59e5fc8cedb1b8 stripping out the RDF from the model (including the graphing and simulation metadata) using rdfExtractor; adding the RDF in a new file; adding the CSim summary description for reproducing the simulations and graphs from the original graphing and simulation metadata. David Nickerson 2013-01-14 correcting error in interfaces detected when getting model running with CSim https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/f002e31d90db67fc46af2261f084e42df406925a correcting error in interfaces detected when getting model running with CSim David Nickerson 2013-01-14 need to ensure graph id's are unique across models in order for the reference description code to work. https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/af1556121d1eb352778b3a1f598b31a77a0ebc2a need to ensure graph id's are unique across models in order for the reference description code to work. David Nickerson 2010-04-21 adding more annotations for the graphs demonstrating that this model is reproducing the results as published in Figure 3 of the Mackenzie et al (1996) article https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/f74438190df5e6cce0526b4e60cd01461f67ab12 adding more annotations for the graphs demonstrating that this model is reproducing the results as published in Figure 3 of the Mackenzie et al (1996) article David Nickerson 2010-04-21 adding an initial base model which only exposes the variables needed to reproduce figure 3 from the original Mackenzie et al (1996) article; and adding simulation and graphing metadata descriptions of that figure along with the model instantiations required to compute the data required. https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/ec33e0870ff126f6b41c7c4ad4f291954d6a8d9b adding an initial base model which only exposes the variables needed to reproduce figure 3 from the original Mackenzie et al (1996) article; and adding simulation and graphing metadata descriptions of that figure along with the model instantiations required to compute the data required. David Nickerson 2010-04-20 need to export the time variable to allow it to be used outside the generated decomposed model https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/bc1650b2377f3a003e24dcc35e15a908776fec3e need to export the time variable to allow it to be used outside the generated decomposed model David Nickerson 2010-04-20 alter the rate of change of V to be 1mV per second https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/a96e09c6bf2441c6ae80d1cb07dcba2698d71625 alter the rate of change of V to be 1mV per second David Nickerson 2010-04-20 adding a decomposed version of the model generated using the 'decompose' utility https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/e749cf52952b9266411c3e42bdff1332c3fc55a0 adding a decomposed version of the model generated using the 'decompose' utility David Nickerson 2010-04-19 updating SVG and PNG versions of diagram using the 'export text as outline' option in illustrator to get consistent rendering of the greek symbols in the figure https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/9f2ca0917849ca542268f2a90886e30cd6e21b19 updating SVG and PNG versions of diagram using the 'export text as outline' option in illustrator to get consistent rendering of the greek symbols in the figure David Nickerson 2010-04-19 Changed images so rate constants correct https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/097e4b94ab87f3908285ce41192caf6e75052263 Changed images so rate constants correct Hanne 2010-04-16 Removed images not for this model https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/6e2475fc43d075fa3193c57126cb9aa5dea8c5e9 Removed images not for this model Hanne 2010-04-16 Added second image incuding CNa Drug https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/2fbadaaca07216db48c621463a1e8e04696bbd63 Added second image incuding CNa Drug Hanne 2010-04-16 Added images in ai svg and png format https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/1892540dbb723e0f5d15622381c03b5f6724c370 Added images in ai svg and png format Hanne 2010-04-16 Pushing the model into the workspace for the first time. The model has been checked in both OpenCell and COR and it runs to recreate the published results. Units are cosnsitent. Waiting for an image and a session file to be created. https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/@@file/a2a187457deed98bbe7ad12dc9f013bfe46a2657 Pushing the model into the workspace for the first time. The model has been checked in both OpenCell and COR and it runs to recreate the published results. Units are cosnsitent. Waiting for an image and a session file to be created. Catherine Lloyd 2010-04-16