- Author:
- David Nickerson <nickerso@users.sourceforge.net>
- Date:
- 2016-03-24 16:26:13+13:00
- Desc:
- adding protein module keyword
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/rawfile/9e1413fd915169aa9390c97e20c5e3884a020916/decomposed-model/rate_constants_model.xml
<?xml version="1.0"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" name="rate_constants_model">
<component name="rate_constants">
<variable name="Na_i" private_interface="out" public_interface="in" units="M"/>
<variable name="Na_o" private_interface="out" public_interface="in" units="M"/>
<variable name="glucose_i" private_interface="out" public_interface="in" units="M"/>
<variable name="glucose_o" private_interface="out" public_interface="in" units="M"/>
<variable name="k_12" private_interface="out" public_interface="out" units="per_second"/>
<variable name="k_21" private_interface="out" public_interface="out" units="per_second"/>
<variable name="k_23" private_interface="out" public_interface="out" units="per_second"/>
<variable name="k_32" private_interface="out" public_interface="out" units="per_second"/>
<variable name="k_34" private_interface="out" public_interface="out" units="per_second"/>
<variable name="k_43" private_interface="out" public_interface="out" units="per_second"/>
<variable name="k_45" private_interface="out" public_interface="out" units="per_second"/>
<variable name="k_54" private_interface="out" public_interface="out" units="per_second"/>
<variable name="k_25" private_interface="out" public_interface="out" units="per_second"/>
<variable name="k_52" private_interface="out" public_interface="out" units="per_second"/>
<variable name="k_56" private_interface="out" public_interface="out" units="per_second"/>
<variable name="k_65" private_interface="out" public_interface="out" units="per_second"/>
<variable name="k_61" private_interface="out" public_interface="out" units="per_second"/>
<variable name="k_16" private_interface="out" public_interface="out" units="per_second"/>
<variable name="k0_12" private_interface="out" public_interface="in" units="per_M_per_second"/>
<variable name="ks_12" private_interface="out" public_interface="out" units="per_M_per_second"/>
<variable name="k0_21" private_interface="out" public_interface="in" units="per_second"/>
<variable name="k0_23" private_interface="out" public_interface="in" units="per_M_per_second"/>
<variable name="k0_32" private_interface="out" public_interface="in" units="per_second"/>
<variable name="k0_34" private_interface="out" public_interface="in" units="per_second"/>
<variable name="k0_43" private_interface="out" public_interface="in" units="per_second"/>
<variable name="k0_45" private_interface="out" public_interface="in" units="per_second"/>
<variable name="k0_54_temp" private_interface="out" public_interface="out" units="per_M_per_second"/>
<variable name="k0_54" private_interface="out" public_interface="in" units="per_M_per_second"/>
<variable name="k0_25" private_interface="out" public_interface="in" units="per_second"/>
<variable name="k_52_temp" private_interface="out" public_interface="out" units="per_second"/>
<variable name="k0_52" private_interface="out" public_interface="in" units="per_second"/>
<variable name="k0_56" private_interface="out" public_interface="in" units="per_second"/>
<variable name="k0_65" private_interface="out" public_interface="in" units="per_M_per_second"/>
<variable name="k0_61" private_interface="out" public_interface="in" units="per_second"/>
<variable name="k0_16" private_interface="out" public_interface="in" units="per_second"/>
<variable name="delta" private_interface="out" public_interface="in" units="dimensionless"/>
<variable name="n" private_interface="out" public_interface="in" units="dimensionless"/>
<variable name="z_c" private_interface="out" public_interface="in" units="dimensionless"/>
<variable name="z_Na" private_interface="out" public_interface="in" units="dimensionless"/>
<variable name="alpha_p" private_interface="out" public_interface="in" units="dimensionless"/>
<variable name="alpha_pp" private_interface="out" public_interface="in" units="dimensionless"/>
<variable name="C_T" private_interface="out" public_interface="in" units="umol"/>
<variable name="mu" private_interface="out" public_interface="in" units="dimensionless"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>ks_12</ci>
<apply>
<times/>
<ci>k0_12</ci>
<apply>
<exp/>
<apply>
<divide/>
<apply>
<times/>
<apply>
<minus/>
<ci>n</ci>
</apply>
<ci>alpha_p</ci>
<ci>mu</ci>
</apply>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="dimensionless">2</cn>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>k_12</ci>
<apply>
<times/>
<ci>ks_12</ci>
<apply>
<power/>
<ci>Na_o</ci>
<ci>n</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>k_21</ci>
<apply>
<times/>
<ci>k0_21</ci>
<apply>
<exp/>
<apply>
<divide/>
<apply>
<times/>
<ci>n</ci>
<ci>z_Na</ci>
<ci>alpha_p</ci>
<ci>mu</ci>
</apply>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="dimensionless">2</cn>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>k_23</ci>
<apply>
<times/>
<ci>k0_23</ci>
<ci>glucose_o</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>k_32</ci>
<ci>k0_32</ci>
</apply>
<apply>
<eq/>
<ci>k_34</ci>
<apply>
<times/>
<ci>k0_34</ci>
<apply>
<exp/>
<apply>
<divide/>
<apply>
<times/>
<apply>
<minus/>
<apply>
<plus/>
<ci>z_c</ci>
<ci>n</ci>
</apply>
</apply>
<ci>delta</ci>
<ci>mu</ci>
</apply>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="dimensionless">2</cn>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>k_43</ci>
<apply>
<times/>
<ci>k0_43</ci>
<apply>
<exp/>
<apply>
<divide/>
<apply>
<times/>
<apply>
<plus/>
<ci>z_c</ci>
<ci>n</ci>
</apply>
<ci>delta</ci>
<ci>mu</ci>
</apply>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="dimensionless">2</cn>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>k_45</ci>
<ci>k0_45</ci>
</apply>
<apply>
<eq/>
<ci>k_54</ci>
<apply>
<times/>
<ci>k0_54_temp</ci>
<ci>glucose_i</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>k_25</ci>
<apply>
<times/>
<ci>k0_25</ci>
<apply>
<exp/>
<apply>
<divide/>
<apply>
<times/>
<apply>
<minus/>
<apply>
<plus/>
<ci>z_c</ci>
<ci>n</ci>
</apply>
</apply>
<ci>delta</ci>
<ci>mu</ci>
</apply>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="dimensionless">2</cn>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>k_52_temp</ci>
<apply>
<times/>
<ci>k0_52</ci>
<apply>
<exp/>
<apply>
<divide/>
<apply>
<times/>
<apply>
<plus/>
<ci>z_c</ci>
<ci>n</ci>
</apply>
<ci>delta</ci>
<ci>mu</ci>
</apply>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="dimensionless">2</cn>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>k_56</ci>
<apply>
<times/>
<ci>k0_56</ci>
<apply>
<exp/>
<apply>
<divide/>
<apply>
<times/>
<apply>
<minus/>
<ci>n</ci>
</apply>
<ci>z_Na</ci>
<ci>alpha_pp</ci>
<ci>mu</ci>
</apply>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="dimensionless">2</cn>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>k_65</ci>
<apply>
<times/>
<ci>k0_65</ci>
<apply>
<power/>
<ci>Na_i</ci>
<ci>n</ci>
</apply>
<apply>
<exp/>
<apply>
<divide/>
<apply>
<times/>
<ci>n</ci>
<ci>z_Na</ci>
<ci>alpha_pp</ci>
<ci>mu</ci>
</apply>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="dimensionless">2</cn>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>k_61</ci>
<apply>
<times/>
<ci>k0_61</ci>
<apply>
<exp/>
<apply>
<divide/>
<apply>
<times/>
<ci>z_c</ci>
<ci>delta</ci>
<ci>mu</ci>
</apply>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="dimensionless">2</cn>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>k_16</ci>
<apply>
<times/>
<ci>k0_16</ci>
<apply>
<exp/>
<apply>
<divide/>
<apply>
<times/>
<apply>
<minus/>
<ci>z_c</ci>
</apply>
<ci>delta</ci>
<ci>mu</ci>
</apply>
<cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="dimensionless">2</cn>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>k_52</ci>
<apply>
<divide/>
<apply>
<times/>
<ci>k0_12</ci>
<ci>k_25</ci>
<ci>k0_56</ci>
<ci>k0_61</ci>
</apply>
<apply>
<times/>
<ci>k0_21</ci>
<ci>k0_16</ci>
<ci>k0_65</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>k0_54_temp</ci>
<apply>
<divide/>
<apply>
<times/>
<ci>k0_23</ci>
<ci>k_34</ci>
<ci>k_45</ci>
<ci>k_52</ci>
</apply>
<apply>
<times/>
<ci>k_43</ci>
<ci>k_32</ci>
<ci>k_25</ci>
</apply>
</apply>
</apply>
</math>
</component>
<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="mackenzie_1996_units_model.xml">
<units name="per_second" units_ref="per_second"/>
<units name="per_second5" units_ref="per_second5"/>
<units name="per_mol" units_ref="per_mol"/>
<units name="umol" units_ref="umol"/>
<units name="M" units_ref="M"/>
<units name="um2" units_ref="um2"/>
<units name="mol_per_um2" units_ref="mol_per_um2"/>
<units name="mM" units_ref="mM"/>
<units name="mV" units_ref="mV"/>
<units name="J_per_K_per_mol" units_ref="J_per_K_per_mol"/>
<units name="pA_per_cm2" units_ref="pA_per_cm2"/>
<units name="uA" units_ref="uA"/>
<units name="uA_per_um2" units_ref="uA_per_um2"/>
<units name="uA_per_A" units_ref="uA_per_A"/>
<units name="umol_per_mol" units_ref="umol_per_mol"/>
<units name="umol_per_second" units_ref="umol_per_second"/>
<units name="C_per_mol" units_ref="C_per_mol"/>
<units name="per_M2_per_second" units_ref="per_M2_per_second"/>
<units name="M2" units_ref="M2"/>
<units name="M3" units_ref="M3"/>
<units name="M2_per_second" units_ref="M2_per_second"/>
<units name="per_M2_per_second5" units_ref="per_M2_per_second5"/>
<units name="M_per_second" units_ref="M_per_second"/>
<units name="per_M_per_second" units_ref="per_M_per_second"/>
<units name="volt_per_second" units_ref="volt_per_second"/>
</import>
</model>
