Location: Mackenzie, Loo, Panayotova-Heiermann and Wright, 1996 @ 9e1413fd9151 / experiments / figure-03.xml

Author:
David Nickerson <nickerso@users.sourceforge.net>
Date:
2016-03-24 16:26:13+13:00
Desc:
adding protein module keyword
Permanent Source URI:
https://staging.physiomeproject.org/workspace/mackenzie_loo_panayotova-heiermann_wright_1996/rawfile/9e1413fd915169aa9390c97e20c5e3884a020916/experiments/figure-03.xml

<?xml version="1.0"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" name="figure_03">
	<simulation xmlns="http://cellml.sourceforge.net/csim/simulation/0.1#"
		id="simulation1">
		<boundVariable start="0.0" end="100.0"
			maxStep="0.1" tabulationStep="1.0" />
		<!-- Figure 3(a) -->
		<outputVariable component="variables_1" variable="V" column="1" />
		<outputVariable component="variables_1" variable="Khalf_gluc" column="2" />
		<outputVariable component="variables_2" variable="V" column="3" />
		<outputVariable component="variables_2" variable="Khalf_gluc" column="4" />
		<!-- Figure 3(b) -->
		<outputVariable component="variables_3" variable="V" column="5" />
		<outputVariable component="variables_3" variable="Khalf_Na" column="6" />
		<outputVariable component="variables_4" variable="V" column="7" />
		<outputVariable component="variables_4" variable="Khalf_Na" column="8" />
		<outputVariable component="variables_5" variable="V" column="9" />
		<outputVariable component="variables_5" variable="Khalf_Na" column="10" />
		<!-- Figure 3(c) -->
		<outputVariable component="variables_1" variable="V" column="11" />
		<outputVariable component="variables_1" variable="Imax_gluc" column="12" />
		<outputVariable component="variables_2" variable="V" column="13" />
		<outputVariable component="variables_2" variable="Imax_gluc" column="14" />
		<!-- Figure 3(d) -->
		<outputVariable component="variables_3" variable="V" column="15" />
		<outputVariable component="variables_3" variable="Imax_Na" column="16" />
		<outputVariable component="variables_4" variable="V" column="17" />
		<outputVariable component="variables_4" variable="Imax_Na" column="18" />
		<outputVariable component="variables_5" variable="V" column="19" />
		<outputVariable component="variables_5" variable="Imax_Na" column="20" />
	</simulation>
	<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="figure-03-base.xml">
		<component component_ref="variables" name="model_1"/>
	</import>
	<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="figure-03-base.xml">
		<component component_ref="variables" name="model_2"/>
	</import>
	<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="figure-03-base.xml">
		<component component_ref="variables" name="model_3"/>
	</import>
	<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="figure-03-base.xml">
		<component component_ref="variables" name="model_4"/>
	</import>
	<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="figure-03-base.xml">
		<component component_ref="variables" name="model_5"/>
	</import>
	<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="../decomposed-model/mackenzie_1996_units_model.xml">
		<units name="M" units_ref="M"/>
		<units name="volt" units_ref="volt"/>
		<units name="second" units_ref="second"/>
		<units name="uA" units_ref="uA"/>
	</import>
	<component name="variables_1" cmeta:id="variables_1">
		<variable cmeta:id="Na_i_1" name="Na_i" units="M" public_interface="out" initial_value="10e-3"/>
		<variable cmeta:id="Na_o_1" name="Na_o" units="M" public_interface="out" initial_value="5e-3"/>
		<variable cmeta:id="glucose_i_1" name="glucose_i" units="M" public_interface="out" initial_value="0.0"/>
		<variable cmeta:id="glucose_o_1" name="glucose_o" units="M" public_interface="out" initial_value="1.0e-3"/>
		<variable cmeta:id="time_1" name="time" units="second" public_interface="in"/>
		<variable cmeta:id="V_1" name="V" units="volt" public_interface="in"/>
		<variable cmeta:id="Imax_Na_1" name="Imax_Na" public_interface="in" units="uA"/>
		<variable cmeta:id="Imax_gluc_1" name="Imax_gluc" public_interface="in" units="uA"/>
		<variable cmeta:id="Khalf_Na_1" name="Khalf_Na" public_interface="in" units="M"/>
		<variable cmeta:id="Khalf_gluc_1" name="Khalf_gluc" public_interface="in" units="M"/>
	</component>
	<component name="variables_2" cmeta:id="variables_2">
		<variable cmeta:id="Na_i_2" name="Na_i" units="M" public_interface="out" initial_value="10e-3"/>
		<variable cmeta:id="Na_o_2" name="Na_o" units="M" public_interface="out" initial_value="100e-3"/>
		<variable cmeta:id="glucose_i_2" name="glucose_i" units="M" public_interface="out" initial_value="0.0"/>
		<variable cmeta:id="glucose_o_2" name="glucose_o" units="M" public_interface="out" initial_value="1.0e-3"/>
		<variable cmeta:id="time_2" name="time" units="second" public_interface="in"/>
		<variable cmeta:id="V_2" name="V" units="volt" public_interface="in"/>
		<variable cmeta:id="Imax_Na_2" name="Imax_Na" public_interface="in" units="uA"/>
		<variable cmeta:id="Imax_gluc_2" name="Imax_gluc" public_interface="in" units="uA"/>
		<variable cmeta:id="Khalf_Na_2" name="Khalf_Na" public_interface="in" units="M"/>
		<variable cmeta:id="Khalf_gluc_2" name="Khalf_gluc" public_interface="in" units="M"/>
	</component>
	<component name="variables_3" cmeta:id="variables_3">
		<variable cmeta:id="Na_i_3" name="Na_i" units="M" public_interface="out" initial_value="10e-3"/>
		<variable cmeta:id="Na_o_3" name="Na_o" units="M" public_interface="out" initial_value="100e-3"/>
		<variable cmeta:id="glucose_i_3" name="glucose_i" units="M" public_interface="out" initial_value="0.0"/>
		<variable cmeta:id="glucose_o_3" name="glucose_o" units="M" public_interface="out" initial_value="1.0e-3"/>
		<variable cmeta:id="time_3" name="time" units="second" public_interface="in"/>
		<variable cmeta:id="V_3" name="V" units="volt" public_interface="in"/>
		<variable cmeta:id="Imax_Na_3" name="Imax_Na" public_interface="in" units="uA"/>
		<variable cmeta:id="Imax_gluc_3" name="Imax_gluc" public_interface="in" units="uA"/>
		<variable cmeta:id="Khalf_Na_3" name="Khalf_Na" public_interface="in" units="M"/>
		<variable cmeta:id="Khalf_gluc_3" name="Khalf_gluc" public_interface="in" units="M"/>
	</component>
	<component name="variables_4" cmeta:id="variables_4">
		<variable cmeta:id="Na_i_4" name="Na_i" units="M" public_interface="out" initial_value="10e-3"/>
		<variable cmeta:id="Na_o_4" name="Na_o" units="M" public_interface="out" initial_value="100e-3"/>
		<variable cmeta:id="glucose_i_4" name="glucose_i" units="M" public_interface="out" initial_value="0.0"/>
		<variable cmeta:id="glucose_o_4" name="glucose_o" units="M" public_interface="out" initial_value="5.0e-3"/>
		<variable cmeta:id="time_4" name="time" units="second" public_interface="in"/>
		<variable cmeta:id="V_4" name="V" units="volt" public_interface="in"/>
		<variable cmeta:id="Imax_Na_4" name="Imax_Na" public_interface="in" units="uA"/>
		<variable cmeta:id="Imax_gluc_4" name="Imax_gluc" public_interface="in" units="uA"/>
		<variable cmeta:id="Khalf_Na_4" name="Khalf_Na" public_interface="in" units="M"/>
		<variable cmeta:id="Khalf_gluc_4" name="Khalf_gluc" public_interface="in" units="M"/>
	</component>
	<component name="variables_5" cmeta:id="variables_5">
		<variable cmeta:id="Na_i_5" name="Na_i" units="M" public_interface="out" initial_value="10e-3"/>
		<variable cmeta:id="Na_o_5" name="Na_o" units="M" public_interface="out" initial_value="100e-3"/>
		<variable cmeta:id="glucose_i_5" name="glucose_i" units="M" public_interface="out" initial_value="0.0"/>
		<variable cmeta:id="glucose_o_5" name="glucose_o" units="M" public_interface="out" initial_value="50.0e-3"/>
		<variable cmeta:id="time_5" name="time" units="second" public_interface="in"/>
		<variable cmeta:id="V_5" name="V" units="volt" public_interface="in"/>
		<variable cmeta:id="Imax_Na_5" name="Imax_Na" public_interface="in" units="uA"/>
		<variable cmeta:id="Imax_gluc_5" name="Imax_gluc" public_interface="in" units="uA"/>
		<variable cmeta:id="Khalf_Na_5" name="Khalf_Na" public_interface="in" units="M"/>
		<variable cmeta:id="Khalf_gluc_5" name="Khalf_gluc" public_interface="in" units="M"/>
	</component>
	<connection>
		<map_components component_1="variables_1" component_2="model_1"/>
		<map_variables variable_1="Na_i" variable_2="Na_i"/>
		<map_variables variable_1="Na_o" variable_2="Na_o"/>
		<map_variables variable_1="glucose_i" variable_2="glucose_i"/>
		<map_variables variable_1="glucose_o" variable_2="glucose_o"/>
		<map_variables variable_1="V" variable_2="V"/>
		<map_variables variable_1="time" variable_2="time"/>
		<map_variables variable_1="Imax_Na" variable_2="Imax_Na"/>
		<map_variables variable_1="Imax_gluc" variable_2="Imax_gluc"/>
		<map_variables variable_1="Khalf_Na" variable_2="Khalf_Na"/>
		<map_variables variable_1="Khalf_gluc" variable_2="Khalf_gluc"/>
	</connection>
	<connection>
		<map_components component_1="variables_2" component_2="model_2"/>
		<map_variables variable_1="Na_i" variable_2="Na_i"/>
		<map_variables variable_1="Na_o" variable_2="Na_o"/>
		<map_variables variable_1="glucose_i" variable_2="glucose_i"/>
		<map_variables variable_1="glucose_o" variable_2="glucose_o"/>
		<map_variables variable_1="V" variable_2="V"/>
		<map_variables variable_1="time" variable_2="time"/>
		<map_variables variable_1="Imax_Na" variable_2="Imax_Na"/>
		<map_variables variable_1="Imax_gluc" variable_2="Imax_gluc"/>
		<map_variables variable_1="Khalf_Na" variable_2="Khalf_Na"/>
		<map_variables variable_1="Khalf_gluc" variable_2="Khalf_gluc"/>
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		<map_components component_1="variables_3" component_2="model_3"/>
		<map_variables variable_1="Na_i" variable_2="Na_i"/>
		<map_variables variable_1="Na_o" variable_2="Na_o"/>
		<map_variables variable_1="glucose_i" variable_2="glucose_i"/>
		<map_variables variable_1="glucose_o" variable_2="glucose_o"/>
		<map_variables variable_1="V" variable_2="V"/>
		<map_variables variable_1="time" variable_2="time"/>
		<map_variables variable_1="Imax_Na" variable_2="Imax_Na"/>
		<map_variables variable_1="Imax_gluc" variable_2="Imax_gluc"/>
		<map_variables variable_1="Khalf_Na" variable_2="Khalf_Na"/>
		<map_variables variable_1="Khalf_gluc" variable_2="Khalf_gluc"/>
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	<connection>
		<map_components component_1="variables_4" component_2="model_4"/>
		<map_variables variable_1="Na_i" variable_2="Na_i"/>
		<map_variables variable_1="Na_o" variable_2="Na_o"/>
		<map_variables variable_1="glucose_i" variable_2="glucose_i"/>
		<map_variables variable_1="glucose_o" variable_2="glucose_o"/>
		<map_variables variable_1="V" variable_2="V"/>
		<map_variables variable_1="time" variable_2="time"/>
		<map_variables variable_1="Imax_Na" variable_2="Imax_Na"/>
		<map_variables variable_1="Imax_gluc" variable_2="Imax_gluc"/>
		<map_variables variable_1="Khalf_Na" variable_2="Khalf_Na"/>
		<map_variables variable_1="Khalf_gluc" variable_2="Khalf_gluc"/>
	</connection>
	<connection>
		<map_components component_1="variables_5" component_2="model_5"/>
		<map_variables variable_1="Na_i" variable_2="Na_i"/>
		<map_variables variable_1="Na_o" variable_2="Na_o"/>
		<map_variables variable_1="glucose_i" variable_2="glucose_i"/>
		<map_variables variable_1="glucose_o" variable_2="glucose_o"/>
		<map_variables variable_1="V" variable_2="V"/>
		<map_variables variable_1="time" variable_2="time"/>
		<map_variables variable_1="Imax_Na" variable_2="Imax_Na"/>
		<map_variables variable_1="Imax_gluc" variable_2="Imax_gluc"/>
		<map_variables variable_1="Khalf_Na" variable_2="Khalf_Na"/>
		<map_variables variable_1="Khalf_gluc" variable_2="Khalf_gluc"/>
	</connection>
</model>