- Author:
- David Nickerson <nickerso@users.sourceforge.net>
- Date:
- 2010-09-03 14:29:07+12:00
- Desc:
- fixing up the markup
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/nephron/rawfile/a32ce4e03df43c94b19818a71a6a1444a617eaea/reference-description.xml
<?xml version="1.0" encoding="iso-8859-1"?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#" xmlns:bqs="http://www.cellml.org/bqs/1.0#"
xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:cs="http://www.cellml.org/metadata/simulation/1.0#"
xmlns:cg="http://www.cellml.org/metadata/graphs/1.0#" xmlns:csim="http://cellml.sourceforge.net/CellMLSimulator/#">
<rdf:Description rdf:ID="andre">
<vCard:N rdf:parseType="Resource">
<vCard:Family>Nickerson</vCard:Family>
<vCard:Given>David</vCard:Given>
</vCard:N>
<vCard:EMAIL rdf:parseType="Resource">
<rdf:value>d.nickerson@auckland.ac.nz</rdf:value>
<rdf:type rdf:resource="http://imc.org/vCard/3.0#internet" />
</vCard:EMAIL>
<vCard:ORG rdf:parseType="Resource">
<vCard:Orgname>The University of Auckland</vCard:Orgname>
<vCard:Orgunit>Auckland Bioengineering Institute</vCard:Orgunit>
</vCard:ORG>
</rdf:Description>
<rdf:Description>
<csim:referenceDescription>
<rdf:Description rdf:ID="reference-description">
<dc:title>
Constituents of the Renal Nephron
</dc:title>
<dcterms:abstract rdf:parseType="Resource">
<rdf:value>
This reference description is attempting to document, validate, and collect models in the CellML model repository which are relevant to the renal nephron. As the whole nephron model is built this collection will grow.
</rdf:value>
</dcterms:abstract>
<dcterms:description rdf:parseType="Resource">
<rdf:value>
We are actively developing a whole nephron model and will use this workspace in the CellML model repository to collect all relevant models. As appropriate, the model validation studies and application will also be described here.
</rdf:value>
</dcterms:description>
<dc:creator rdf:resource="#andre" />
<dcterms:created rdf:parseType="Resource">
<dcterms:W3CDTF>2010-04-20</dcterms:W3CDTF>
</dcterms:created>
<dc:publisher>
Auckland Bioengineering Institute, The University of Auckland.
</dc:publisher>
<bqs:reference rdf:parseType="Resource">
<bqs:Pubmed_id>8955098</bqs:Pubmed_id>
</bqs:reference>
<bqs:reference rdf:parseType="Resource">
<bqs:Pubmed_id>16007500</bqs:Pubmed_id>
</bqs:reference>
<bqs:reference rdf:parseType="Resource">
<bqs:Pubmed_id>10362782</bqs:Pubmed_id>
</bqs:reference>
<cmeta:modification rdf:parseType="Resource">
<rdf:value>
Adding further graphs from the Eskandari model.
</rdf:value>
<cmeta:modifier rdf:resource="#andre" />
<dcterms:modified rdf:parseType="Resource">
<dcterms:W3CDTF>2010-04-22</dcterms:W3CDTF>
</dcterms:modified>
</cmeta:modification>
<cmeta:modification rdf:parseType="Resource">
<rdf:value>
Adding more structure to the Eskandari description.
</rdf:value>
<cmeta:modifier rdf:resource="#andre" />
<dcterms:modified rdf:parseType="Resource">
<dcterms:W3CDTF>2010-04-22</dcterms:W3CDTF>
</dcterms:modified>
</cmeta:modification>
<cmeta:modification rdf:parseType="Resource">
<rdf:value>
Adding initial graphs from Eskandari et al (2005) model.
</rdf:value>
<cmeta:modifier rdf:resource="#andre" />
<dcterms:modified rdf:parseType="Resource">
<dcterms:W3CDTF>2010-04-21</dcterms:W3CDTF>
</dcterms:modified>
</cmeta:modification>
<cmeta:modification rdf:parseType="Resource">
<rdf:value>
Adding more metadata for Mackenzie model.
</rdf:value>
<cmeta:modifier rdf:resource="#andre" />
<dcterms:modified rdf:parseType="Resource">
<dcterms:W3CDTF>2010-04-21</dcterms:W3CDTF>
</dcterms:modified>
</cmeta:modification>
<cmeta:modification rdf:parseType="Resource">
<rdf:value>
Create an initial reference description for the SGLT1 and SGLT2 models used in the nephron interface.
</rdf:value>
<cmeta:modifier rdf:resource="#andre" />
<dcterms:modified rdf:parseType="Resource">
<dcterms:W3CDTF>2010-04-20</dcterms:W3CDTF>
</dcterms:modified>
</cmeta:modification>
<csim:tasks rdf:parseType="Collection">
<rdf:Description rdf:about="#SGLT1-task"/>
<rdf:Description rdf:about="#SGLT2-task"/>
</csim:tasks>
</rdf:Description>
</csim:referenceDescription>
<csim:task>
<rdf:Description rdf:ID="SGLT1-task">
<dc:title>
Eskandari et al (2005)
</dc:title>
<dcterms:abstract rdf:parseType="Resource">
<rdf:value>
Some initial validation of the CellML implementation of the Eskandari et al (2005) model of the SGLT1 Na/Glucose cotransporter.
</rdf:value>
</dcterms:abstract>
<dcterms:description rdf:parseType="Resource">
<rdf:value>
Here we present the Eskandari et al (2005) SGLT1 Na/Glucose cotransporter model in CellML. We include some initial model encoding validation studies demonstrating that our implementation of the model in CellML is capable of reproducing results as published in the original article.
</rdf:value>
</dcterms:description>
<dc:creator rdf:resource="#andre" />
<dcterms:created rdf:parseType="Resource">
<dcterms:W3CDTF>2010-04-21</dcterms:W3CDTF>
</dcterms:created>
<csim:tasks rdf:parseType="Collection">
<rdf:Description rdf:about="#SGLT1-figure-02-task"/>
<rdf:Description rdf:about="#SGLT1-figure-03-task"/>
<rdf:Description rdf:about="#SGLT1-figure-04-task"/>
</csim:tasks>
</rdf:Description>
</csim:task>
<csim:task>
<rdf:Description rdf:ID="SGLT1-figure-02-task">
<dc:title>
Eskandari et al (2005), Figure 2
</dc:title>
<dcterms:abstract rdf:parseType="Resource">
<rdf:value>
Reproducing the results given in Figure 2(b) of the original article.
</rdf:value>
</dcterms:abstract>
<dc:creator rdf:resource="#andre" />
<dcterms:created rdf:parseType="Resource">
<dcterms:W3CDTF>2010-04-22</dcterms:W3CDTF>
</dcterms:created>
<csim:graphs rdf:parseType="Collection">
<rdf:Description
rdf:about="eskandari_wright_loo_2005/experiments/figure-02.xml#SGLT1-figure-02-b" />
</csim:graphs>
</rdf:Description>
</csim:task>
<csim:task>
<rdf:Description rdf:ID="SGLT1-figure-03-task">
<dc:title>
Eskandari et al (2005), Figure 3
</dc:title>
<dcterms:abstract rdf:parseType="Resource">
<rdf:value>
Reproducing the results given in Figure 3 of the original article.
</rdf:value>
</dcterms:abstract>
<dc:creator rdf:resource="#andre" />
<dcterms:created rdf:parseType="Resource">
<dcterms:W3CDTF>2010-04-22</dcterms:W3CDTF>
</dcterms:created>
<csim:graphs rdf:parseType="Collection">
<rdf:Description
rdf:about="eskandari_wright_loo_2005/experiments/figure-03.xml#SGLT1-figure-03-a" />
<rdf:Description
rdf:about="eskandari_wright_loo_2005/experiments/figure-03.xml#SGLT1-figure-03-b" />
</csim:graphs>
</rdf:Description>
</csim:task>
<csim:task>
<rdf:Description rdf:ID="SGLT1-figure-04-task">
<dc:title>
Eskandari et al (2005), Figure 4
</dc:title>
<dcterms:abstract rdf:parseType="Resource">
<rdf:value>
Reproducing the results given in Figure 4 of the original article.
</rdf:value>
</dcterms:abstract>
<dc:creator rdf:resource="#andre" />
<dcterms:created rdf:parseType="Resource">
<dcterms:W3CDTF>2010-04-22</dcterms:W3CDTF>
</dcterms:created>
<csim:graphs rdf:parseType="Collection">
<rdf:Description
rdf:about="eskandari_wright_loo_2005/experiments/figure-04.xml#SGLT1-figure-04" />
</csim:graphs>
</rdf:Description>
</csim:task>
<csim:task>
<rdf:Description rdf:ID="SGLT2-task">
<dc:title>
Mackenzie et al (1996)
</dc:title>
<dcterms:abstract rdf:parseType="Resource">
<rdf:value>
Some initial validation of the CellML implementation of the Mackenzie et al (1996) model of the SGLT2 Na/Glucose cotransporter.
</rdf:value>
</dcterms:abstract>
<dcterms:description rdf:parseType="Resource">
<rdf:value>
Here we present the Mackenzie et al (1996) SGLT2 Na/Glucose cotransporter model in CellML. We include some initial model encoding validation studies demonstrating that our implementation of the model in CellML is capable of reproducing results as published in the original article.
</rdf:value>
</dcterms:description>
<dc:creator rdf:resource="#andre" />
<dcterms:created rdf:parseType="Resource">
<dcterms:W3CDTF>2009-07-06</dcterms:W3CDTF>
</dcterms:created>
<csim:graphs rdf:parseType="Collection">
<rdf:Description
rdf:about="mackenzie_loo_panayotova-heiermann_wright_1996/experiments/figure-03.xml#SGLT2-figure-03-a" />
<rdf:Description
rdf:about="mackenzie_loo_panayotova-heiermann_wright_1996/experiments/figure-03.xml#SGLT2-figure-03-b" />
<rdf:Description
rdf:about="mackenzie_loo_panayotova-heiermann_wright_1996/experiments/figure-03.xml#SGLT2-figure-03-c" />
<rdf:Description
rdf:about="mackenzie_loo_panayotova-heiermann_wright_1996/experiments/figure-03.xml#SGLT2-figure-03-d" />
</csim:graphs>
</rdf:Description>
</csim:task>
</rdf:Description>
</rdf:RDF>
