https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003 en-us https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/31f9a2a8b29890441c010c521d92458f24270e2d Adding sedml file Shelley Fong 2021-08-31 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/1ef5588898aed358db0ce113f07b015a2a3f9042 Fixing original author Shelley Fong 2021-08-31 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/4eb7684ee4bc7bbdd2c66daa6a72e1f9542c21e1 Curated with fixed unit consistency. Model runs in OpenCOR snapshot 2021-08-19, which has capability to solve DAEs. Shelley Fong 2021-08-27 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/23d9226364daaa1fac2d0f3cb43f9ea9786e626e Added arrows to ai and svg Hanne 2010-09-01 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/771e271a7ab5351435413b83ec94cace2c87bd70 Used Notepad++ autoformat of XML, since OpenCell had put everything on one line for the new Pacing component, i.e. only whitespace differences. Randall Britten 2010-08-18 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/3611b94be956a309521c8feb0317f88703919d03 Removed use of Piecewise with ten forced stimulus pulses. Replaced with "Pacing component", which uses units of milliseconds, so that use of MathML "rem" (i.e. modulus) operator works: Turns out current implementation on CCGS is to cast both operands to integer, which means that mod(x,1) is always 0. Using a component means that the units conversion from seconds to milliseconds is done automatically due to the rule for connected variables. mod(x,1000) now works. Randall Britten 2010-08-18 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/fb6bde2fe936787b55de310e9b774314098f73d2 Replaced use of MathML "rem" (i.e. remainder / modulus) for repeated pacing with 10 explicit pacing "pieces". Only paces 10 times though, at spacings of 1 second, duration of 5 milliseconds, as per original MATLAB. This commit has pacing switched off (protocol set to 0). Have tried with pacing on (protocol set to 1), and do get sort of action potentials, but shape and sign seems wrong. If the problem with remainder/modulus is sorted out, just revert this commit out. Randall Britten 2010-08-17 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/b5ee58412fee179a6318723509002762e73b3ff5 No semantic differences, only white-space: used Notepad++ (with XML plug-in) to "pretty-print" i.e. reformat the XML. Randall Britten 2010-08-17 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/8c159b119986ba4a9317b1423dddb58ff20aa497 Fixed broken metadata. Catherine Lloyd 2010-08-07 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/fb6e4e7c148e175a002e8c9d719d9c6035d54f82 Update documentation to mention that the model now works in OpenCell. Justin Marsh 2010-08-06 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/64b7685cb2e6f6f456772ff2949b11be4121d7ce MErge in changes from verified branch. Justin Marsh 2010-08-05 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/09814107c83704b7952872c90ea1766ddfbf3d35 Added in exposure metadata from curated branch. Justin Marsh 2010-08-05 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/d14bc20721323030719ce1a411a2ef5096249714 Changed to working version of cellml model, no pacing version of matlab, and added copies of the graphing scripts which were used to verify the correspondence. Justin Marsh 2010-08-04 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/782b5e842648f3209e8e6b202523455e80cbdfc3 Original Matlab code for Saucerman et al model. With the permission of first author of original paper (see https://tracker.physiomeproject.org/show_bug.cgi?id=1474#c10). Randall Britten 2010-08-03 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/103fdc0b34aa4113140f3cab3aa07572d5130e36 Added extra RDF initial condition hints that allow this model to run to recreate the published results using the CellML API. Updated curation status to reflect this. Geoff Nunns 2010-05-13 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/33f8eb17342bc5613ba41e2d4d35e611eef1ffc9 Added imagesi n ai and svg format Hanne 2009-12-14 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/701c8d6eb7330df3842fd7e3ba2e7c18a7ace997 Corrected e notation. gnun003 2009-12-02 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/7b6b8d553b7aae95b456037dd521550691c59066 Added documentation and metadata and a curation statement. Catherine Lloyd 2009-12-02 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/9ffb424c552e669207488f0e12cf3c40178c3d03 Corrected several equations, checked generated matlab against original matlab. Geoff Nunns 2009-10-29 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/c7624582ba30602c85de80ec026f17f5ce576a71 Rewrote CellML file using original matlab code, also DAEs are provided with initial guesses to help with solving Geoff Nunns 2009-10-23 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/32016fbb7ea9f87558bffdca3e1365b70b208241 committing version05 of saucerman_brunton_michailova_mcculloch_2003 pmr2.import 2009-06-17 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/69b8808f1150614e23756893600202b8b7f3825e committing version04 of saucerman_brunton_michailova_mcculloch_2003 pmr2.import 2008-06-15 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/542dce03163266c0ace0cf0b59bca2a82bfd4f5f committing version03 of saucerman_brunton_michailova_mcculloch_2003 pmr2.import 2007-09-20 https://staging.physiomeproject.org/workspace/saucerman_brunton_michailova_mcculloch_2003/@@file/e5422b92bc7cca4e36c92f8866d76b74f22662c3 committing version02 of saucerman_brunton_michailova_mcculloch_2003 pmr2.import 2007-05-23