- Author:
- pmr2.import <nobody@models.cellml.org>
- Date:
- 2008-07-14 19:57:35+12:00
- Desc:
- committing version01 of terkildsen_niederer_crampin_hunter_smith_2008
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/terkildsen_niederer_crampin_hunter_smith_2008/rawfile/f48218c43ce58695c3f9e31cd55d9a98f93267e7/terkildsen_niederer_crampin_hunter_smith_2008.cellml
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<title>Using Physiome standards to couple cellular functions for rat cardiac excitation-contraction</title>
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<firstname>Catherine</firstname>
<surname>Lloyd</surname>
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<shortaffil>Bioengineering Institute, University of Auckland</shortaffil>
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<title>Model Status</title>
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Since this is the exact same model encoding which was used to create the results presented in the paper, this CellML model is known to accurately represent the published article.
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<sect1 id="sec_structure">
<title>Model Structure</title>
<para>
ABSTRACT: Scientific endeavour is reliant upon the extension and reuse of previous knowledge. The formalization of this process for computational modelling is facilitated by the use of accepted standards with which to describe and simulate models, ensuring consistency between the models and thus reducing the development and propagation of errors. CellML 1.1, an XML-based programming language, has been designed as a modelling standard which, by virtue of its import and grouping functions, facilitates model combination and reuse. Using CellML 1.1, we demonstrate the process of formalized model reuse by combining three separate models of rat cardiomyocyte function (an electrophysiology model, a model of cellular calcium dynamics and a mechanics model) which together make up the Pandit-Hinch-Niederer et al. cell model. Not only is this integrative model of rat electromechanics a useful tool for cardiac modelling but it is also an ideal framework with which to demonstrate both the power of model reuse and the challenges associated with this process. We highlight and classify a number of these issues associated with combining models and provide some suggested solutions.
</para>
<para>
<ulink url="http://ep.physoc.org/cgi/content/abstract/93/7/919">Using Physiome standards to couple cellular functions for rat cardiac excitation-contraction</ulink>, Jonna R. Terkildsen, Steven Niederer, Edmund J. Crampin, Peter Hunter and Nicolas P. Smith, 2008, <ulink url="http://ep.physoc.org/">
<emphasis>Experimental Physiology</emphasis>
</ulink>, 93, 919-929. (<ulink url="http://ep.physoc.org/cgi/content/full/93/7/919">Full text</ulink> and <ulink url="http://ep.physoc.org/cgi/reprint/93/7/919">PDF</ulink> versions of the article are available to journal subscribers on the <emphasis>Experimental Physiology</emphasis> website.) <ulink url="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=18344258&query_hl=1&itool=pubmed_docsum">PubMed ID: 18344258</ulink>
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Please get the model code <ulink url="http://www.cellml.org/models_1.1/pandit-hinch-niederer-model/">here</ulink>.
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