Workspaces
The list of model workspaces.
- Generic mouse heart scaffold
- Generic mouse lung scaffold
- Generic mouse small intestine scaffold
- Generic mouse stomach scaffold
- Generic mouse uterus scaffold
- Generic Pig Bladder Scaffold
- Generic pig brainstem scaffold
- Generic pig colon scaffold
- Generic pig heart scaffold
- Generic pig lung
- Generic pig stomach scaffold
- Generic pregnant human uterus scaffold
- Generic rat bladder scaffold
- Generic rat brainstem scaffold
- Generic rat heart scaffold
- Generic rat lung scaffold
- Generic rat stomach scaffold
- Generic rat uterus scaffold
- Generic sheep brainstem
- Geniohyoid
- Geniohyoideus
- Gerard and Goldbeter 2009
- Gerard and Goldbeter 2009
- Gerstner,Kistler,2002
- get-library
- Gilbert, Heiner, Rosser, Fulton, Gu, Trybilo, 2007
- Glucose Transport Model (Thorsen)
- Glucose Uptake in Enterocyte
- GLUT
- GLUT demo for CFDE Summer School in Mechanistic Modeling for PBPK Transport
- GLUT2 - The Physics of Physiology
- Goforth, Bertram, Khan, Zhang, Sherman, Satin, 2002
- Goldbeter 2006
- Goldbeter Dupont Berridge 1990
- Goldbeter Dupont Berridge 1990
- Goldbeter, 1991
- Goldbeter, 1995
- Goldbeter, Gonze and Pourquie 2007
- Goldbeter, Pourquie, 2008
- Gonzalezheydrich, Steingard, Kohane, 1994
- Goodwin, 1965
- Gracilis
- Grandi et al. 2011 Atrial Action Potential and Ca2+ Model
- Grandi, Pasqualini and Bers, 2010
- Grange 2001
- Greenstein, Wu, Po, Tomaselli, Winslow, 2000
- Gross and Hopfer, 1998
- Gross and Hopfer, 1999
- Grossman, Feinberg, Kuznetsov, Dimitrov, Paul, 1998
- Guccione, Mcculloch, Waldman, 1991
- Guidry 2017 Ca2+ transient duration explains the difference between isotonic and isometric cardiac end-systolic force-length relations
- Gupta, Aslakson, Gurbaxani, Vernon, 2007
- Gupta, Maurya, Stephens, Dennis and Subramaniam, 2009
- Gupta, Maurya, Stephens, Dennis and Subramaniam, 2009
- Guyton, Aldosterone, 2008
- Guyton, Angiotensin, 2008
- Guyton, Antidiuretic, Hormone, 2008
- Guyton, Atrial, Natriuretic, Peptide, 2008
- Guyton, Autonomics, 2008
- Guyton, Capillary, Dynamics, 2008
- Guyton, Circulatory, Dynamics, 2008
- Guyton, Electrolytes, 2008
- Guyton, Full cardiovascular circulation model
- Guyton, Heart Hypertrophy or Deterioration, 2008
- Guyton, Heart, Rate, And, Stroke, Volume, 2008
- Guyton, Kidney, 2008
- Guyton, Muscle, Blood, Flow, Control, 2008
- Guyton, Muscle, Oxygen, Delivery, 2008
- Guyton, Non, Muscle, Blood, Flow, Control, 2008
- Guyton, Non, Muscle, Oxygen, Delivery, 2008
- Guyton, Pulmonary, Fluid, Dynamics, 2008
- Guyton, Pulmonary, Oxygen, Uptake, 2008
- Guyton, Red, Cells, And, Viscosity, 2008
- Guyton, Stress, Relaxation, 2008
- Guyton, Thirst, Drinking, And, Salt, Appetite, 2008
- Guyton, Volume, Receptors, 2008
- H+-ATPase (proton pump)
- Hai and Murphy 1988
- Halloy, Bernard, Loussouarn, Goldbeter, 2002
- HAMATE
- Han 2019 - Solving a century-old conundrum underlying cardiac force-length relations
- Harrington, 2009
- Hatakeyama, Kimura, Naka, Kawasaki, Yumoto, Ichikawa, Kim, Saito, Saeki, Shirouzu, Yokoyama, Konagaya, 2003
- Hatzimanikatis, Lee, Bailey, 1999
- Haugh, 2004
- Heart Failure model with SK channels included
- Heart Model
- Heijman et al. 2011
- Heinze, Keener, Midgley, 1998
- Heldt 2002
- Herz, Bonhoeffer, Anderson, May, Nowak, 1996
- Heyd, Drew, 2003
- HH Sodium Current model for estimation task
- Hilgemann, Noble, 1987
- Hill, 1972 - a model of feto-maternal oxygen exchange
- Hinch, Greenstein, Tanskanen, Xu, Winslow, 2004
- HIP
- Hip joint
- HKE - The Physics of Physiology
- Hodgkin & Huxley (1952) model
- Hodgkin, Huxley, 1952
- Hoefnagel, Starrenburg, Martens, Hugenholtz, Kleerebezem, Vanswam, Bongers, Westerhoff, Snoep, 2002
- Holmes 2006
- Hornberg, Binder, Bruggeman, Schoeberl, Heinrich, Westerhoff, 2005
- Houart, Dupont and Goldbeter 1999
- Houart, Dupont and Goldbeter 1999
- Huang, Ferrell, 1996
- Human atrial cell models for investigating TBX5/PITX2 insufficiency-induced atrial fibrillation
- human flatmap
- human flatmap
- Human Left Ventricle
- Human Stomach Scaffold
- Human whole-body scaffold
- Human whole-body scaffold with embedded organs
- Human whole-body with embedded organs using automatic workflow for inserting the organs
- HUMERUS
- Hund, Rudy, 2004
- Hund, Rudy, 2004
- Hunt, Tilunaite, Bass, Soeller, Roderick, Rajagopal, Crampin
- Hunter, Mcculloch, Terkeurs, 1998
- Hunter, Mcnaughton, Noble, 1975
- Hunter, Smaill, Hunter, 1995
- Hynne, Dano, Sorensen, 2001
- Iancu 2007
- Iber, Maini, 2002
- ICC_Lees_Green_2014
- Ikeda BMadonna QKDB
- Ikeda BMadonna QKDB
- Improvement of metabolic performance of primary hepatocytes in hyperoxic cultures by vitamin C in a novel small-scale bioreactor
- Imtiaz_IP3_2002
- Inada 2009
- Incorporation of sarcolemmal calcium transporters into the Shorten et al. (2007) model of skeletal muscle
- Infraspinatus
- Inner medullary lactate production and accumulation: a vasa recta model, S. Randall Thomas, 2000
- Interaction of glycolysis and mitochondrial respiration in metabolic oscillations of pancreatic islets, Richard Bertram, Leslie S. Satin, Morten Gram Pedersen, Dan S. Luciani, and Arthur Sherman, 2007
- Intercellular calcium waves mediated by diffusion of inositol trisphosphate: a two-dimensional model. J. Sneyd, B.T. Wetton, A.C. Charles and M.J. Sanderson, 1995
- International, Si, Units, 2006
- Interpolation field over mesh with uncertain nodal values
- Interstitial Cell of Cajal Network Imaging Data
- Intervertebral Disc of C2
- Intervertebral disc of C2
- Intervertebral disc of C3
- Intervertebral Disc of C3
- Intervertebral Disc of C4
- Intervertebral Disc of C5
- Intervertebral Disc of C6
- Intervertebral Disc of C7
- Intervertebral disc of L1
- Intervertebral disc of L2
- Intervertebral disc of L3
- Intervertebral disc of L4
- Intervertebral disc of T1
- Intervertebral disc of T2
- Intervertebral disc of T3
- Intervertebral disc of T4
- Intervertebral disc of T5
- Intervertebral disc of T6
- Intervertebral disc of T7
- Intervertebral disc of T8
- Intervertebral disc of T9
- Intervertebral disc of T10
- Intervertebral disc of T11
- Intervertebral disc of T12
- Intestine knowledge
- Intracellular pH regulation
- Iribe, Kohl, Noble, 2006
- Irvine, Jafri, Winslow, 1999
- Itskov, Ehret, Mavrilas, 2006
- Iyer, Hajjar, Armoundas, 2007
- Iyer, Mazhari, Winslow, 2004
- Iyer, Mazhari, Winslow, 2004
- Izakov, Katsnelson, Blyakhman, Markhasin, Shkylar, 1991
- Jafri, Rice, Winslow, 1998
- Jafri, Rice, Winslow, 1998
- Jelic, Cupic, Kolaranic, 2005
- Joseph, Zavros, Merchant, Kirschner, 2003
- K ATP protein knowledge page
- KACh protein knowledge page
- Kapela, A. Bezerianos, A. and Tsoukias, N. M. 2008
- Karagiannis, Popel, 2004
- Karagiannis, Popel, 2006
- Katsnelson, Nikitina, Chemla, Solovyova, Coirault, Lecarpentier, Markhasin, 2004
- Keener, 2001
- Keizer, Levine, 1996
- Kernik et al. 2019
- Kernik_physiome
- Kesmir, Deboer, 1999
- Kholodenko, Demin, Moehren, Hoek, 1999
- Kholodenko, Demin, Moehren, Hoek, 1999
- Kidney knowledge
- Kinetics of the Reverse Mode of the Na+/Glucose Cotransporter, Eskandari, Wright, Loo, 2005
- KIR protein knowledge page
- Kirschner, Panetta, 1998
- Kirschner, Webb, 1996
- Knee joint
- Kneller, Ramirez, Chartier, Courtemanche, Nattel, 2002
- Kobro-Flatmoen & Omholt 2024
- Koivumäki, Korhonen, Tavi 2011 Atrial AP model
- Koivumaki,2009
- Komarova 2005
- Komarova, Smith, Dixon, Sims and Wahl, 2003
- Komarova, Wodarz, 2003
- Kongas, Vanbeek, 2001
- Korzeniewski, Zoladz, 2001
- Kp protein knowledge page
- Kraeutler_Logic_Models
- Kroll, 2000
- KTO knowledge page
- Kurata, Hisatome, Imanishi, Shibamoto, 2002
- Kyrylov, Severyanova, Vieira, 2005
- Lambeth, Kushmerick, 2002
- Land et al. 2012
- Landesberg, Sideman, 1994
- Large Scale Left Ventricular Shape Atlas Using Automated Model Fitting to Contours
- Latency correlates with period in a model for signal-induced Ca2+ oscillations based on Ca2+induced Ca2+ release
- Lateral Pterygoid Left
- Lateral Pterygoid Right
- Lebeau, Robson, Mckinnon, Donald, Sneyd, 1997
- Lebeau, Yule, Groblewski, Sneyd, 1999
- Lees_Green_2014
- Leloup, Goldbeter, 1998
- Leloup, Goldbeter, 2003
- Leloup, Goldbeter, 2004
- Leloup, Gonze, Goldbeter, 1999
- Lemaire, Tobin, Greller, Cho, Suva, 2004
- Lemon, Gibson, Bennett, 2003
- Lenbury, Pacheenburawana, 1991
- Lenbury, Pornsawad, 2005
- Lenbury, Ruktamatakul, Amornsamarnkul, 2001
- LG_Na_voltage_clamp
- Li, Bertram and Rinzel, 1996
- Li, Bertram and Rinzel, 1996
- Li, Kuang, Mason, 2006
- Li, Rinzel, 1994
- Li, Smith, 2009
- Lindblad, Murphey, Clark, Giles, 1996
- Linear 2nd order nonhomogeneous ODE with constant coefficients
- Liu, Hu, Peng, Liu, 1999
- Livshitz, Rudy, 2007
- Lockwood, Ewy, Hermann, Holford, 2006
- Loewe-Lutz-Fabbri-Severi human sinus node cellular electrophysiology model
- Lokta, Volterra
- Longus Capitis
- Longus Colli
- Longus Colli Inferior
- Longus Colli Superior
- Longus Colli Vertical
- Lovell, Cloherty, Celler, Dokos, 2004
- Lumbar spine
- Lumbar Vertebrae 1
- Lumbar Vertebrae 2
- Lumbar Vertebrae 3
- Lumbar Vertebrae 4
- Lumbar Vertebrae 5
- Lumbrical I
- Lumbrical II
- Lumbrical III
- Lumbrical IV
- Luo, Rudy, 1991
- Luo, Rudy, 1994
- luo_rudy_1991
- Macgregor, Leng, 2005
- Mackenzie, Loo, Panayotova-Heiermann and Wright, 1996
- Magnus, Keizer, 1997
- Magnus, Keizer, 1998
- Mahajan, Shiferaw, Sato, Baher, Olcese, Xie, Yang, Chen, Restrepo, Karma, Garfinkel, Qu, Weiss, 2008
- Main SLC Models
- Maldonado, Borchers, Findeisen and Allgower, 2006
- Maleckar, Greenstein, Trayanova, Giles, 2009
- Maleckar, Greenstein, Trayanova, Giles, 2009
- Maltsev 2009
- Maly, Wiley, Lauffenburger, 2004
- Malys et al. 2010
- Marcano, Yang, Nieves-Gonzalez, Clausen, Moore 2009
- Margaridamartins, Mendes, Coreiro, Pocesfreire, 2001
- Marhl, Haberichter, Brumen, Heinrich, 2000
- Marhl, Schuster, Brumen, Heinrich, 1997
- Martinov, Vitvitsky, Mosharov, Banerjee, Ataullakhanov, 2000
- Marwan, 2003
- Masseter Left
- Masseter Right
- Matsuoka, Sarai, Kuratomi, Ono, Noma, 2003
- Maurya et al. 2005
- Mazhari, Greenstein, Winslow, Marban, Nuss, 2001
- Mcallister, Noble, Tsien, 1975
- McIntyre, Richardson, Grill, 2001
- Mckenzie, Sneyd, 1998
- Mclean, Su, Vandenbogert, 2003
- Mears 1997
- Mechanism of doxorubicin cardiotoxicity evaluated by integrating multiple molecular effects into a biophysical model
- Medial Pterygoid Left
- Medial Pterygoid Right
- Metabolic Component Library
- Metabolic Pathways
- Metabolite-sensitive cross-bridge models of human atria
- METACARPAL_I
- METACARPAL_II
- MichaelPanCardiacAPModel
- Michailova 2005
- Michailova, Mcculloch, 2001
- MIDDLE_PHALANX_II
- MIDDLE_PHALANX_III
- MIDDLE_PHALANX_IV
- MIDDLE_PHALANX_V
- Miftakhov, Abdusheva, Christensen, 1999
- Mijailovich, Butler, Fredburg, 2000
- Mikane, Araki, Kohno, Nakayama, Suzuki, Shimuzi, Matsubara, Hirakawa, Takaki, Suga, 1997
- Minimal haemodynamic system model including ventricular interaction and valve dynamics, Bram W Smith, J Geoffrey Chase, Roger I Nokes, Geoffrey M Shaw, Graeme Wake, 2004
- Mitchell, Schaeffer, 2003
- Mitochondria regulate the amplitude of simple and complex calcium oscillations
- Mittler, Sulzer, Neumann, Perelson, 1998
- Mlcek, Neumann, Kittnar, Novak, 2001
- Model of a rabbit Purkinje cell
- Model of excitation-contraction in uterine myocytes from a pregnant rat
- Model of Excitation-Contraction in a uterine SMC
- Model of Human Jejunal Smooth Muscle Cell Electrophysiology
- Model of skeletal muscle cramp and its reversal
- Model of skeletal muscle cramp and its reversal
- Modeling the Recruitment and Synchronization of SMCs (Koenigsberger et al. 2004)
- Models for the OpenCOR and PMR tutorial by Peter Hunter
- Modular Analysis of Signal Transduction Networks
- Modular version of Glucose uptake (including water transport)
- Mohr, Taylor, Newell, 2008
- Moore, Li, 2004
- Moore, Li, 2004
- Morris and Lecar 1981
- Mosekilde, Lading, Yanchuk, Maistrenko, 2001
- Moss, Kazmierczak, Kirley, Harris, 2009
- Moss, Kazmierczak, Kirley, Harris, 2009
- mouse flatmap
- Mouse whole-body scaffold with embedded organs
- mRNA expression levels in failing human hearts predict cellular electrophysiological remodeling: A population-based simulation study
- MSK Models
- MSM: Blood pressure control
- MSM: Cellular scale
- MSM: Tissue scale
- MSM: Whole body scale
- Muller, Obeyesekere, Mills, Ram, 2008
- multi_FCU_AP_and_EC
- My Beeler Model
- Mylohyoid
- Mylohyoideus
- Myocardial contractility and regional work throughout the cardiac cycle using FEM and MRI
- Na channel knowledge page
- Na+/Glucose Transporter
- Na+/H+ Exchanger
- Na+/HCO3- Cotransporter
- Na+/K+-ATPase (sodium-potassium pump)
- NaB protein knowledge page
- Nagano and Gerritsen, 2001
- Nagerl, Novo, Mody, Vergara, 2000
- Nash, Panfilov, 2004
- Nazaret, Heiske, Thurley and Mazat, 2009
- NBCe1 - The Physics of Physiology
- NCE - The Physics of Physiology
- NCE protein knowledge page
- NDCBE - The Physics of Physiology
- Nelson, Murray, Perelson, 2000
- Nelson, Perelson 1995
- Neumann, Lam, Dahari, Gretch, Wiley, Layden, Perelson, 1998
- Neurovascular Coupling
- Nevo, Golding, Neumann, Schwartz, Akselrod, 2004
- NHE1 - The Physics of Physiology
- Ni et al. 2017 Human atrial model
- Niederer 2013 PlosOne
- Niederer, Hunter, Smith, 2006
- Niederer, Hunter, Smith, 2006
- Niederer, Smith, 2007
- NKE knowledge page
- NKE pump
- NKE pump - The Physics of Physiology
- Noble 1962 model for Physiome article
- Noble, 1962
- Noble, 2000
- Noble, Denyer, Brown, DiFrancesco, 1992
- Noble, DiFrancesco, Denyer, 1989
- Noble, Difrancesco, Denyer, 1989
- Noble, Noble, 1984
- Noble, Noble, 2001
- Noble, Noble, Bett, Earm, Ho, So, 1991
- Noble, Varghese, Kohl, Noble, 1998
- Noble1998
- Noble_Noble_1984
- Nonlinearities make a difference: comparison of two common Hill-type models with real muscle, Siebert, Rode, Herzog, Till, Blickhan, 2008
- Notch signaling pathway
- Novak, Csikasznagy, Gyorffy, Chen, Tyson, 1998
- Novak, Pataki, Ciliberto, Tyson, 2001
- Novak, Tyson, 1993
- Novak, Tyson, 1993
- Novak, Tyson, 1997
- Novak, Tyson, 2004
- Nowak, Bangham, 1996
- NVC
- Nygren, Fiset, Firek, Clark, Lindblad, Clark, Giles, 1998
- O'Hara-Rudy-CiPA-v1.0 (2017)
- Obeyesekere, Zimmerman, Tecarro, Auchmuty, 1999
- Olsen, Hauser, Kummer, 2003
- Omohyoideus
- On the encoding and decoding of calcium signals in hepatocytes
- One-pool model for Ca2+ oscillations involving Ca2+ and inositol 1,4,5-trisphosphate as co-agonists for Ca2+ release
- Oomens, Maenhout, Vanoijen, Drost, Baaijens, 2003
- OpenCOR
- OpenCOR issue 231
- OpenCOR issue 458
- OpenCOR issue demonstration - initial_value
- Opponens digiti minimi
- Opponens pollicis
- Optimal velocity and safety of discontinuous conduction through the heterogeneous Purkinje-ventricular junction, Oleg V. Aslanidi, Philip Stewart, Mark R. Boyett and Henggui Zhang, 2009
- Ostby, Oyehaug, Einevoll, Nagelhus, Plahte, Zeuthen, Voipio, Lloyd, Ottersen, Omholt, 2008
- Ostby, Oyehaug, Einevoll, Nagelhus, Plahte, Zeuthen, Voipio, Lloyd, Ottersen, Omholt, 2008
- Overgaard 2007
- Oyehaug, Ostby, Lloyd, Omholt, Einevoll, 2011
- Oyehaug, Ostby, Lloyd, Ottersen, Omholt, Einevoll, 2009
- paci_hyttinen_aaltosetala_severi_2013
- paci_hyttinen_aaltosetala_severi_2013
- Palecek, Horwitz, Lauffenburger, 1999
- Palmar interossei I
- Palmar interossei II
- Palmar interossei III
- Palmaris brevis
- Palmaris longus
- Pandit, Clark, Giles, Demir, 2001
- Pandit, Giles, Demir, 2003
- Panerai, 1980
- Parent, Supplisson, Loo, Wright, 1992
- Pasek, Simurda, Christe, 2006
- Pasek, Simurda, Orchard, Christe, 2008
- Passive epithelial cell transport models
- PATELLA
- PBPK-FcRn
- Pedersen, Bertram, Sherman, 2005
- Per Pixel Lighting
- Perelson 1993
- Perelson, Neumann, Markowitz, Leonard, Ho, 1996
- Peripheral airways matlab/CellML
- Peterson and Riggs, 2010
- pH control
- pH Regulation
- Pharyngeal Constrictor
- Phillips 2007
- Phillips 2007
- Phillips 2008
- Phillips 2008
- pig flatmap
- Pig whole-body with embedded organs using automatic workflow for inserting the organs
- PISIFORM
- Pivonka, Zimak, Smith, Gardiner, Dunstan, Sims, Martin and Mundy, 2008
- Plant, 1981
- Platysma
- Playing with stimulus frequency and the ORd model
- PMCA knowledge page
- Poh, 2012
- Popliteus
- Potassium delayed rectifier channel knowledge page
- Potter, Greller, Cho, Nuttall, Stroup, Suva, Tobin, 2005
- Potter, Zager, Barton, 2006
- Practical application of CellML 1.1: The integration of new mechanisms into a human ventricular myocyte model
- Priebe, Beuckelmann, 1998
- Principled Model Base
- Proctor, 2005
- Proctor, 2007
- Pronator quadratus
- Pronator teres
- Protein CDS for GFP
- Protein CDS for PhzM
- Protein CDS for PhzS
- Protein CDS for spaK
- Protein CDS for spaR
- Protein CDS for TF ElectrEcoblu Device 1
- Protein CDS for TF ElectrEcoblu Device 2
- Proton pump - The Physics of Physiology
- Prototype reset rules
- PROXIMAL_PHALANX_I
- PROXIMAL_PHALANX_II
- PROXIMAL_PHALANX_III
- PROXIMAL_PHALANX_V
- Puglisi, Bers, 2001
- Pulmonary Acinus pFTU
- Purvis, Butera, 2005
- Purvis, Butera, 2005
- Purvis, Smith, Koizumi, Butera, 2007
- Qu, Maclellan, Weiss, 2003
- Quantitative cellular description of gastric slow wave activity
- RADIUS
- Ralser at el. 2007
- Ralser at el. 2007
- Ramirez, Nattel, Courtemanche, 2000
- Rangamani 2007
- Raposo, Sobrinho and Ferreira, 2002
- rat flatmap
- rat flatmap
- rat flatmap
- Rat whole body scaffold
- Rat whole-body scaffold with embedded organs
- Rat whole-body with embedded organs using automatic workflow for inserting the organs
- Rattananakul, Lenbury, Krishnamara, Wollkind, 2003
- Razumova, Bukatina, Campbell, 1999
- Razumova, Bukatina, Campbell, 2000
- RBS for GFP
- RBS for PhzM