Model Mathematics

Component: environment

Component: Ca_concentration_in_the_dyadic_space

dd time cp = alpha I_rel - I_d + i_Ca

Component: Ca_concentration_in_the_local_JSR

dd time cf_jsr = I_tr - I_rel

Component: release_current

I_rel = gs a cf_jsr - cp dd time a = a_infinity - a tau_a a_infinity = cp 2.0 cp 2.0 + cp_ 2.0 tau_a = 1.0 kd cp 2.0 + cp_ 2.0

Component: diffusion_current

I_d = cp - cs tau_p

Component: transfer_current

I_tr = cf_nsr - cf_jsr tau_tr

Component: L_type_Ca_channel

I_Ca = M Po i_Ca Po = d_infinity f q q_infinity = 1.0 1.0 + cs cs_ gamma tau_q = q_infinity ko alpha_q = q_infinity tau_q beta_q = 1.0 - q_infinity tau_q dd time q = alpha_q 1.0 - q - beta_q q i_Ca = i_Ca_ P_Ca 4.0 V F 2.0 R T cs 2.0 V F 2.0 R T - 0.341 Cao 2.0 V F 2.0 R T - 1.0 M

Component: L_type_Ca_channel_d_gate

alpha_d = d_infinity tau_d d_infinity = 1.0 1.0 +- V - 5.0 6.24 beta_d = 1.0 - d_infinity tau_d dd time d = alpha_d 1.0 - d - beta_d d

Component: L_type_Ca_channel_f_gate

alpha_f = f_infinity tau_f f_infinity = 1.0 1.0 + V + 35.0 8.6 beta_f = 1.0 - f_infinity tau_f dd time f = alpha_f 1.0 - f - beta_f f

Component: Na_Ca_exchanger

I_NaCa = K_NaCa 1.0 K_mNa 3.0 + Nao 3.0 1.0 K_mCa + Cao 1.0 1.0 + K_sat eta - 1.0 V F R T eta V F R T Nai 3.0 Cao - eta - 1.0 V F R T Nao 3.0 cs

Component: uptake_current

I_up = vup ci 2.0 ci 2.0 + cup 2.0

Component: calcium_buffering

dd time CaTi = I_trpn_i I_trpn_i = kT_on ci BT - CaTi - kT_off CaTi beta_ci = 1.0 + BSR KSR ci + KSR 2.0 + BCd KCd ci + KCd 2.0 -1.0 dd time CaTs = I_trpn_s I_trpn_s = kT_on cs BT - CaTs - kT_off CaTs beta_cs = 1.0 + BSR KSR cs + KSR 2.0 + BCd KCd cs + KCd 2.0 -1.0

Component: Ca_concentration_in_the_submembrane_space

dd time cs = beta_cs vi vs I_r - cs - ci taus + I_Ca + I_NaCa - I_trpn_s

Component: Ca_concentration_in_the_cytosol

dd time ci = beta_ci cs - ci taus - I_up + I_trpn_i

Component: total_Ca_concentration_in_the_SR

dd time cj = I_up - I_r

Component: average_Ca_concentration_in_unrecruited_JSR_compartments

dd time cj_ = cj - cj_ taua

Component: Ca_flux_out_of_the_SR

I_r =- g I_Ca Q I_r taur N =- g I_Ca A Q = 0.0 if cj_ < 50.0 cj_ > 0.0 cj_ - 50.0 if cj_ < 115.0 cj_ 50.0 u cj_ + s if cj_ 115.0

Component: membrane

V = Vmin + Vmax - Vmin 1.0 - time - m T m T 2.0 0.5 if time m T + x T time m T Vmin if time < m + 1.0 T time > m T + x T x = a a + T

Component: intracellular_Na_concentration

Nai = a 1.0 + b T 0.5

Component: physical_constants_and_ionic_concentrations