Generated Code
The following is c_ida code generated by the CellML API from this CellML file. (Back to language selection)
The raw code is available.
/*
There are a total of 13 entries in the algebraic variable array.
There are a total of 8 entries in each of the rate and state variable arrays.
There are a total of 16 entries in the constant variable array.
*/
/*
* VOI is time in component environment (second).
* STATES[0] is q_PLB in component environment (fmol).
* STATES[1] is q_PKACI in component environment (fmol).
* STATES[2] is q_PLB_PKACI in component environment (fmol).
* STATES[3] is q_PP1 in component environment (fmol).
* STATES[4] is q_PLBp_PP1 in component environment (fmol).
* STATES[5] is q_PLBp in component environment (fmol).
* STATES[6] is q_Ip in component environment (fmol).
* STATES[7] is q_Ip_PP1 in component environment (fmol).
* ALGEBRAIC[8] is v_PLBph1 in component PLB (fmol_per_sec).
* ALGEBRAIC[9] is v_PLBph2 in component PLB (fmol_per_sec).
* ALGEBRAIC[10] is v_PLBd1 in component PLB (fmol_per_sec).
* ALGEBRAIC[11] is v_PLBd2 in component PLB (fmol_per_sec).
* ALGEBRAIC[12] is v_Inh in component PLB (fmol_per_sec).
* CONSTANTS[0] is kappa_PLBph1 in component PLB_parameters (fmol_per_sec).
* CONSTANTS[1] is kappa_PLBph2 in component PLB_parameters (fmol_per_sec).
* CONSTANTS[2] is kappa_PLBd1 in component PLB_parameters (fmol_per_sec).
* CONSTANTS[3] is kappa_PLBd2 in component PLB_parameters (fmol_per_sec).
* CONSTANTS[4] is kappa_Inh in component PLB_parameters (fmol_per_sec).
* CONSTANTS[5] is K_PLB in component PLB_parameters (per_fmol).
* CONSTANTS[6] is K_PKACI in component PLB_parameters (per_fmol).
* CONSTANTS[7] is K_PLB_PKACI in component PLB_parameters (per_fmol).
* CONSTANTS[8] is K_PP1 in component PLB_parameters (per_fmol).
* CONSTANTS[9] is K_PLBp_PP1 in component PLB_parameters (per_fmol).
* CONSTANTS[10] is K_PLBp in component PLB_parameters (per_fmol).
* CONSTANTS[11] is K_Ip in component PLB_parameters (per_fmol).
* CONSTANTS[12] is K_Ip_PP1 in component PLB_parameters (per_fmol).
* CONSTANTS[13] is R in component constants (J_per_K_per_mol).
* CONSTANTS[14] is T in component constants (kelvin).
* ALGEBRAIC[0] is mu_PLB in component PLB (J_per_mol).
* ALGEBRAIC[1] is mu_PKACI in component PLB (J_per_mol).
* ALGEBRAIC[2] is mu_PLB_PKACI in component PLB (J_per_mol).
* ALGEBRAIC[3] is mu_PP1 in component PLB (J_per_mol).
* ALGEBRAIC[4] is mu_PLBp_PP1 in component PLB (J_per_mol).
* ALGEBRAIC[5] is mu_PLBp in component PLB (J_per_mol).
* ALGEBRAIC[6] is mu_Ip in component PLB (J_per_mol).
* ALGEBRAIC[7] is mu_Ip_PP1 in component PLB (J_per_mol).
* CONSTANTS[15] is F in component constants (C_per_mol).
* RATES[0] is d/dt q_PLB in component environment (fmol).
* RATES[1] is d/dt q_PKACI in component environment (fmol).
* RATES[2] is d/dt q_PLB_PKACI in component environment (fmol).
* RATES[3] is d/dt q_PP1 in component environment (fmol).
* RATES[4] is d/dt q_PLBp_PP1 in component environment (fmol).
* RATES[5] is d/dt q_PLBp in component environment (fmol).
* RATES[6] is d/dt q_Ip in component environment (fmol).
* RATES[7] is d/dt q_Ip_PP1 in component environment (fmol).
* There are a total of 0 condition variables.
*/
void
initConsts(double* CONSTANTS, double* RATES, double *STATES)
{
STATES[0] = 4.028E+00;
STATES[1] = 1.117E-03;
STATES[2] = 1e-13;
STATES[3] = 3.382E-02;
STATES[4] = 1e-13;
STATES[5] = 1.560E-01;
STATES[6] = 9.994E-04;
STATES[7] = 1e-13;
CONSTANTS[0] = 45.5263;
CONSTANTS[1] = 6.55904;
CONSTANTS[2] = 0.386674;
CONSTANTS[3] = 1.21269;
CONSTANTS[4] = 431.435;
CONSTANTS[5] = 0.00235741;
CONSTANTS[6] = 0.395191;
CONSTANTS[7] = 0.638527;
CONSTANTS[8] = 0.361989;
CONSTANTS[9] = 0.203757;
CONSTANTS[10] = 0.326014;
CONSTANTS[11] = 5.41093;
CONSTANTS[12] = 0.0673793;
CONSTANTS[13] = 8.31;
CONSTANTS[14] = 310;
CONSTANTS[15] = 96485;
RATES[0] = 0.1001;
RATES[1] = 0.1001;
RATES[2] = 0.1001;
RATES[3] = 0.1001;
RATES[4] = 0.1001;
RATES[5] = 0.1001;
RATES[6] = 0.1001;
RATES[7] = 0.1001;
}
void
computeResiduals(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES,
double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS)
{
resid[0] = RATES[0] - ALGEBRAIC[11] - ALGEBRAIC[8];
resid[1] = RATES[1] - ALGEBRAIC[9] - ALGEBRAIC[8];
resid[2] = RATES[2] - ALGEBRAIC[8] - ALGEBRAIC[9];
resid[3] = RATES[3] - (ALGEBRAIC[11] - ALGEBRAIC[10]) - ALGEBRAIC[12];
resid[4] = RATES[4] - ALGEBRAIC[10] - ALGEBRAIC[11];
resid[5] = RATES[5] - ALGEBRAIC[9] - ALGEBRAIC[10];
resid[6] = RATES[6] - - ALGEBRAIC[12];
resid[7] = RATES[7] - ALGEBRAIC[12];
}
void
computeVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
}
void
computeEssentialVariables(double VOI, double* CONSTANTS, double* RATES, double* STATES, double* ALGEBRAIC)
{
ALGEBRAIC[0] = CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[5]*STATES[0]);
ALGEBRAIC[1] = CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[6]*STATES[1]);
ALGEBRAIC[2] = CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[7]*STATES[2]);
ALGEBRAIC[8] = CONSTANTS[0]*(exp((ALGEBRAIC[0]+ALGEBRAIC[1])/( CONSTANTS[13]*CONSTANTS[14])) - exp(ALGEBRAIC[2]/( CONSTANTS[13]*CONSTANTS[14])));
ALGEBRAIC[5] = CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[10]*STATES[5]);
ALGEBRAIC[9] = CONSTANTS[1]*(exp(ALGEBRAIC[2]/( CONSTANTS[13]*CONSTANTS[14])) - exp((ALGEBRAIC[5]+ALGEBRAIC[1])/( CONSTANTS[13]*CONSTANTS[14])));
ALGEBRAIC[3] = CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[8]*STATES[3]);
ALGEBRAIC[4] = CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[9]*STATES[4]);
ALGEBRAIC[10] = CONSTANTS[2]*(exp((ALGEBRAIC[5]+ALGEBRAIC[3])/( CONSTANTS[13]*CONSTANTS[14])) - exp(ALGEBRAIC[4]/( CONSTANTS[13]*CONSTANTS[14])));
ALGEBRAIC[11] = CONSTANTS[3]*(exp(ALGEBRAIC[4]/( CONSTANTS[13]*CONSTANTS[14])) - exp((ALGEBRAIC[0]+ALGEBRAIC[3])/( CONSTANTS[13]*CONSTANTS[14])));
ALGEBRAIC[6] = CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[11]*STATES[6]);
ALGEBRAIC[7] = CONSTANTS[13]*CONSTANTS[14]*log( CONSTANTS[12]*STATES[7]);
ALGEBRAIC[12] = CONSTANTS[4]*(exp((ALGEBRAIC[3]+ALGEBRAIC[6])/( CONSTANTS[13]*CONSTANTS[14])) - exp(ALGEBRAIC[7]/( CONSTANTS[13]*CONSTANTS[14])));
}
void
getStateInformation(double* SI)
{
SI[0] = 1.0;
SI[1] = 1.0;
SI[2] = 1.0;
SI[3] = 1.0;
SI[4] = 1.0;
SI[5] = 1.0;
SI[6] = 1.0;
SI[7] = 1.0;
}
void
computeRoots(double VOI, double* CONSTANTS, double* RATES, double* OLDRATES, double* STATES,
double* OLDSTATES, double* ALGEBRAIC, double* CONDVARS)
{
}
