Model Mathematics

Component: environment

Component: nucleus

ddtimeM_P=v_sP⁢K_IPnK_IPn+C_Nn-v_mP⁢M_PK_mP+M_P-k_d⁢M_P ddtimeM_T=v_sT⁢K_ITnK_ITn+C_Nn-v_mT⁢M_TK_mT+M_T-k_d⁢M_T ddtimeC_N=k_1⁢C-k_2⁢C_N-k_dN⁢C_N

Component: cytosol

ddtimeC=k_3⁢P_2⁢T_2-k_4⁢C-k_1⁢C+k_2⁢C_N-k_dC⁢C

Component: PER

ddtimeP_0=k_sP⁢M_P-V_1P⁢P_0K_1P+P_0+V_2P⁢P_1K_2P+P_1-k_d⁢P_0 ddtimeP_1=V_1P⁢P_0K_1P+P_0-V_2P⁢P_1K_2P+P_1-V_3P⁢P_1K_3P+P_1+V_4P⁢P_2K_4P+P_2-k_d⁢P_1 ddtimeP_2=V_3P⁢P_1K_3P+P_1-V_4P⁢P_2K_4P+P_2-k_3⁢P_2⁢T_2+k_4⁢C-v_dP⁢P_2K_dP+P_2-k_d⁢P_2

Component: TIM

ddtimeT_0=k_sT⁢M_T-V_1T⁢T_0K_1T+T_0+V_2T⁢T_1K_2T+T_1-k_d⁢T_0 ddtimeT_1=V_1T⁢T_0K_1T+T_0-V_2T⁢T_1K_2T+T_1-V_3T⁢T_1K_3T+T_1+V_4T⁢T_2K_4T+T_2-k_d⁢T_1 ddtimeT_2=V_3T⁢T_1K_3T+T_1-V_4T⁢T_2K_4T+T_2-k_3⁢P_2⁢T_2+k_4⁢C-v_dT⁢T_2K_dT+T_2-k_d⁢T_2

Component: PER_total

P_t=P_0+P_1+P_2+C+C_N

Component: TIM_total

T_t=T_0+T_1+T_2+C+C_N