Model Mathematics

Component: environment

Component: parameters

Component: active_force

F_b=A_iso⁢RUA_MADPPi+RUA_MADP

Component: Ca_binding_rate

Q_CaB=k_on⁢RUNA⁢Ca-k_off⁢RUTCa_off

Component: TnI_conf_change_rate

Q_TCaA=k_onI⁢RUTCa_off-k_offI⁢RUTCa_on k_offI=k_offi⁢1+k_OFF⁢RUARU_total2⁢1+k_xboff⁢RUA_MADPPi+RUA_MADPRU_total4.4

Component: Tm_conf_change_rate

Q_TMA=k_tmon⁢RUTCa_on-k_tmoff⁢RUTM_on k_tmon=k_tmonc⁢RUTCa_onRU_total⁢1+k_tmRU⁢RUTM_onRU_total2⁢1+k_tmxb⁢RUA_MADPPi+RUA_MADPRU_total2

Component: myosin_binding_rate

Q_MB=k_12⁢KTitin⁢MADPPi⁢RUTM_on_eff-k_minus12⁢RUAMADPPi

Component: KTitin

f_titinNormal=k_Titin⁢9.96631+ⅇLL_0+1.06390.0696 f_titinDamaged=k_Titin⁢-31⁢LL_0+40 KTitin=f_titinNormalifL≦1.1f_titinDamagedotherwise

Component: Force_Generating_rate

Q_Fgen=k_3⁢RUAMADPPi-k_minus3⁢RUA_MADPPi k_3=k_3c⁢1+k_3f⁢RUTCa_on_eff+RUTM_on_eff+RUAMADPPiRU_total2⁢1+k_3xb⁢RUA_MADPPi+RUA_MADPRU_total2

Component: Pi_release_rate

Q_PiR=k_4⁢RUA_MADPPi-k_minus4⁢RUA_MADP

Component: ADP_release_rate

Q_ADPR=k_5⁢RUA_MADP

Component: RU_species

ddtimeRUTCa_off=Q_CaB-Q_TCaA ddtimeRUTCa_on=Q_TCaA-Q_TMA ddtimeRUTM_on=Q_TMA-Q_MB+Q_ADPR ddtimeRUAMADPPi=Q_MB-Q_Fgen ddtimeRUA_MADPPi=Q_Fgen-Q_PiR ddtimeRUA_MADP=Q_PiR-Q_ADPR ddtimeCa=-Q_CaB RUNA=RU_total-RUTCa_off+RUTCa_on+RUTM_on+RUAMADPPi+RUA_MADPPi+RUA_MADP RUA=RUTCa_on+RUTM_on+RUAMADPPi+RUA_MADPPi+RUA_MADP RUTM_on_eff=alpha⁢RUTM_on RUTCa_on_eff=alpha⁢RUTCa_on

Component: alpha

alpha=1.5⁢LL_0-0.5ifL<11if1≦L∧L<1.1-1.6⁢LL_0+2.76otherwise

Component: length

L=L_0