Model Mathematics

Component: environment

Component: R

ddtimeR= phi_2_ O - phi_2 p R + phi_1 R + l_2_ + k_1_ I_1

Component: O

ddtimeO= phi_2 p R - phi_2_ + phi_4 + phi_3 O + phi_4_ A + k_3_ S

Component: A

ddtimeA= phi_4 O - phi_4_ A + phi_5 A + k_1_ + l_2_ I_2

Component: I_1

ddtimeI_1= phi_1 R - k_1_ + l_2_ I_1

Component: I_2

ddtimeI_2= phi_5 A - k_1_ + l_2_ I_2

Component: S

ddtimeS= phi_3 O - k_3_ S

Component: P_IPR

P_IPR= 0.1 O + 0.9 A 4.0

Component: IPR_parameters

phi_1 = k_1 L_1 + l_2 c L_1 + c 1.0 + L_1 L_3 phi_2 = k_2 L_3 + l_4 c L_3 + c 1.0 + L_3 L_1 phi_2_ = k_2_ + l_4_ c 1.0 + c L_5 phi_3 = k_3 L_5 c + L_5 phi_4 = k_4 L_5 + l_6 c c + L_5 phi_4_ = k_1 L_1 + l_2 c c + L_1 phi_5 = L_1 k_4_ + l_6_ c c + L_1

Component: P_RyR

P_RyR = w 1.0 + c Kb 3.0 1.0 + Ka c 4.0 + c Kb 3.0 w_infinity_c = 1.0 + Ka c 4.0 + c Kb 3.0 1.0 + 1.0 Kc + Ka c 4.0 + c Kb 3.0 Ka = ka_minus ka_plus Kb = kb_minus kb_plus Kc = kc_minus kc_plus ddtime w = kc_minus w_infinity_c - w w_infinity_c

Component: calcium

time c = Dc c_x2 + k_f P_IPR + v_1 P_RyR + J_er c_e - c + delta J_in p - J_pm - J_serca + J_mito 2.0 x 2.0 c = c_x2 dd time c_e = gamma J_serca - k_f P_IPR + v_1 P_RyR + J_er c_e - c

Component: plasma_membrane_calcium_pump

J_pm = V_pm c 2.0 K_pm 2.0 + c 2.0

Component: SERCA_pump

J_serca = V_serca c K_serca + c 1.0 c_e

Component: mitochondrial_uptake

J_mito = V_mito c 1.0 + 1.0 c 2.0

Component: influx_from_outside_the_cell

J_in = 0.2 + 0.05 p

Component: IP3_dynamics

p = p0 -0.8 time