Model Mathematics

Component based math viewer is available

Component: Subtilin

Component: SpeciesInitialConcentrations

Component: RNA1_interface

JGain = JPlusProduction - JMinusDegradation

Component: spaK_interface

JGain = JPlusProduction + JPlusspaRActivation + JPlusspaKActiveDephosphorylation - (JMinusspaKActivation + JMinusDegradation)

Component: spaKactive_interface

JGain = JPlusspaKActivation - (JMinusDegradation + JMinusDephosphorylation + JMinusspaRActivation)

Component: spaR_interface

JGain = JPlusProduction + JPlusspaRActiveDephosphorylation - (JMinusDegradation + JMinusspaRActivation)

Component: spaRactive_interface

JGain = JPlusspaRActivation - (JMinusDegradation + JMinusDephosphorylation)

Component: RNA2_interface

JGain = JPlusProduction - JMinusDegradation

Component: GFP_interface

JGain = JPlusProduction - JMinusDegradation

Component: Chassis_Bacillus

Component: WellStirredBag

Component: Time

Component: Bugbuster_Promoter1

Component: Template_Promoter_Constitutive

JRNA = \frac{k 1e9}{localVolume (1e-15) avogadrosConstant}

Component: Template_Species

\frac{d}{d time} (concentration) = JGain

Component: Bioenvironment_Degradation_BugbusterRNA1

Component: Template_RxR1P1

J = k concentration

Component: Bugbuster_RBS_spaR

Component: Template_RBS

RNARiPs = 1e9 k RNA localVolume (1e-15)

Component: Bugbuster_ProteinCDS_spaR

Component: Template_ProteinCDS

J = \frac{1e6 hostRNARiPs}{localVolume}

Component: Bugbuster_RBS_spaK

Component: Template_RBS

RNARiPs = 1e9 k RNA localVolume (1e-15)

Component: Bugbuster_ProteinCDS_spaK

Component: Template_ProteinCDS

J = \frac{1e6 hostRNARiPs}{localVolume}

Component: Template_Species

\frac{d}{d time} (concentration) = JGain

Component: Bioenvironment_Degradation_spaK

Component: Template_RxR1P1

J = k concentration

Component: Bioenvironment_RxR2P1_spaKActivation

Component: Template_RxR2P1

J = reactant1 reactant2 k

Component: Template_Species

\frac{d}{d time} (concentration) = JGain

Component: Bioenvironment_Dephosphorylation_spaKactive

Component: Template_RxR1P1

J = k concentration

Component: Bioenvironment_Degradation_spaKactive

Component: Template_RxR1P1

J = k concentration

Component: Template_Species

\frac{d}{d time} (concentration) = JGain

Component: Bioenvironment_Degradation_spaR

Component: Template_RxR1P1

J = k concentration

Component: Bioenvironment_RxR2P1_spaRActivation

Component: Template_RxR2P1

J = reactant1 reactant2 k

Component: Template_Species

\frac{d}{d time} (concentration) = JGain

Component: Bioenvironment_Dephosphorylation_spaRactive

Component: Template_RxR1P1

J = k concentration

Component: Bioenvironment_Degradation_spaRactive

Component: Template_RxR1P1

J = k concentration

Component: Bugbuster_Promoter2

Component: Template_Promoter_Inductive

JRNA = \frac{\frac{k {tFactor}^{n}}{{Km}^{n} + {tFactor}^{n}} 1e9}{localVolume (1e-15) avogadrosConstant}

Component: Template_Species

\frac{d}{d time} (concentration) = JGain

Component: Bioenvironment_Degradation_BugbusterRNA2

Component: Template_RxR1P1

J = k concentration

Component: Bugbuster_RBS_GFP

Component: Template_RBS

RNARiPs = 1e9 k RNA localVolume (1e-15)

Component: Bugbuster_ProteinCDS_GFP

Component: Template_ProteinCDS

J = \frac{1e6 hostRNARiPs}{localVolume}

Component: Template_Species

\frac{d}{d time} (concentration) = JGain

Component: Bioenvironment_Degradation_GFP

Component: Template_RxR1P1

J = k concentration