Generated Code

# Size of variable arrays:
sizeAlgebraic = 0
sizeStates = 0
sizeConstants = 29
from math import *
from numpy import *

def createLegends():
    legend_states = [""] * sizeStates
    legend_rates = [""] * sizeStates
    legend_algebraic = [""] * sizeAlgebraic
    legend_voi = ""
    legend_constants = [""] * sizeConstants
    legend_constants[0] = "ElaMax in component ParaHeart (UnitE)"
    legend_constants[1] = "ElaMin in component ParaHeart (UnitE)"
    legend_constants[2] = "PlaIni in component ParaHeart (UnitP)"
    legend_constants[3] = "VlaIni in component ParaHeart (UnitV)"
    legend_constants[4] = "ElvMax in component ParaHeart (UnitE)"
    legend_constants[5] = "ElvMin in component ParaHeart (UnitE)"
    legend_constants[6] = "PlvIni in component ParaHeart (UnitP)"
    legend_constants[7] = "VlvIni in component ParaHeart (UnitV)"
    legend_constants[8] = "EraMax in component ParaHeart (UnitE)"
    legend_constants[9] = "EraMin in component ParaHeart (UnitE)"
    legend_constants[10] = "PraIni in component ParaHeart (UnitP)"
    legend_constants[11] = "VraIni in component ParaHeart (UnitV)"
    legend_constants[12] = "ErvMax in component ParaHeart (UnitE)"
    legend_constants[13] = "ErvMin in component ParaHeart (UnitE)"
    legend_constants[14] = "PrvIni in component ParaHeart (UnitP)"
    legend_constants[15] = "VrvIni in component ParaHeart (UnitV)"
    legend_constants[16] = "T in component ParaHeart (second)"
    legend_constants[17] = "Tpwb in component ParaHeart (dimensionless)"
    legend_constants[18] = "Tpww in component ParaHeart (dimensionless)"
    legend_constants[19] = "Ts1 in component ParaHeart (dimensionless)"
    legend_constants[20] = "Ts2 in component ParaHeart (dimensionless)"
    legend_constants[21] = "CVao in component ParaHeart (UnitCV)"
    legend_constants[22] = "CVmi in component ParaHeart (UnitCV)"
    legend_constants[23] = "CVpa in component ParaHeart (UnitCV)"
    legend_constants[24] = "CVti in component ParaHeart (UnitCV)"
    legend_constants[25] = "Vlv0 in component ParaHeart (UnitV)"
    legend_constants[26] = "Vla0 in component ParaHeart (UnitV)"
    legend_constants[27] = "Vra0 in component ParaHeart (UnitV)"
    legend_constants[28] = "Vrv0 in component ParaHeart (UnitV)"
    return (legend_states, legend_algebraic, legend_voi, legend_constants)

def initConsts():
    constants = [0.0] * sizeConstants; states = [0.0] * sizeStates;
    constants[0] = 0.25
    constants[1] = 0.15
    constants[2] = 1.0
    constants[3] = 4.0
    constants[4] = 2.5
    constants[5] = 0.1
    constants[6] = 1.0
    constants[7] = 5.0
    constants[8] = 0.25
    constants[9] = 0.15
    constants[10] = 1.0
    constants[11] = 4.0
    constants[12] = 1.15
    constants[13] = 0.1
    constants[14] = 1.0
    constants[15] = 10.0
    constants[16] = 1.0
    constants[17] = 0.92
    constants[18] = 0.09
    constants[19] = 0.3
    constants[20] = 0.45
    constants[21] = 350.
    constants[22] = 400.
    constants[23] = 350.
    constants[24] = 400.
    constants[25] = 500
    constants[26] = 20
    constants[27] = 20
    constants[28] = 500
    return (states, constants)

def computeRates(voi, states, constants):
    rates = [0.0] * sizeStates; algebraic = [0.0] * sizeAlgebraic
    return(rates)

def computeAlgebraic(constants, states, voi):
    algebraic = array([[0.0] * len(voi)] * sizeAlgebraic)
    states = array(states)
    voi = array(voi)
    return algebraic

def solve_model():
    """Solve model with ODE solver"""
    from scipy.integrate import ode
    # Initialise constants and state variables
    (init_states, constants) = initConsts()

    # Set timespan to solve over
    voi = linspace(0, 10, 500)

    # Construct ODE object to solve
    r = ode(computeRates)
    r.set_integrator('vode', method='bdf', atol=1e-06, rtol=1e-06, max_step=1)
    r.set_initial_value(init_states, voi[0])
    r.set_f_params(constants)

    # Solve model
    states = array([[0.0] * len(voi)] * sizeStates)
    states[:,0] = init_states
    for (i,t) in enumerate(voi[1:]):
        if r.successful():
            r.integrate(t)
            states[:,i+1] = r.y
        else:
            break

    # Compute algebraic variables
    algebraic = computeAlgebraic(constants, states, voi)
    return (voi, states, algebraic)

def plot_model(voi, states, algebraic):
    """Plot variables against variable of integration"""
    import pylab
    (legend_states, legend_algebraic, legend_voi, legend_constants) = createLegends()
    pylab.figure(1)
    pylab.plot(voi,vstack((states,algebraic)).T)
    pylab.xlabel(legend_voi)
    pylab.legend(legend_states + legend_algebraic, loc='best')
    pylab.show()

if __name__ == "__main__":
    (voi, states, algebraic) = solve_model()
    plot_model(voi, states, algebraic)