- Author:
- WeiweiAi <wai484@aucklanduni.ac.nz>
- Date:
- 2021-05-11 16:53:39+12:00
- Desc:
- Add documentation for the folders
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/64f/rawfile/88ccc81e951da6f376e738b986b9f8d9a589abd9/doc/experiments.rst
Experiments protocols
---------------------
Following best practices, this model separates the mathematics from the parameterisation of the model. The mathematical model is imported into a specific parameterised instance in order to perform numerical simulations.
The parameterisation would include defining the stimulus protocol to be applied.
This workspace has three sets of experiments:
1. `Periodic stimulation <../experiments/periodic-stimulus.cellml/view>`_:
2. `Voltage clamp experiment <../experiments/voltage_clamp_experiment.cellml/view>`_:
3. `Action potential propagation along 1D cable model <../experiments/AP_propagation_experiment.cellml/view>`_ (please see :ref:`issues-label`):
Simulation settings
-------------------
Simulation settings are encoded in SED-ML_ documents for experiment execution.
The python scripts to run simulation and reproduce the figures in the original paper are also included.
.. _SED-ML: http://sed-ml.org/
