| 2021-07-06 |
WeiweiAi |
Change the figures size to fit the Physiome paper;
Adjust the solver setting to remove the notch in Fig6.
Minor editting in README.
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Model of Human Jejunal Smooth Muscle Cell Electrophysiology |
| 2021-06-28 |
WeiweiAi |
Set interpolate solution to be False, which gives more accurate results for I_Na at around -65mV (i.e., eliminate the notch in Fig6)
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| 2021-06-21 |
WeiweiAi |
Correct the figure numbers in the doc and typos;
Change the default temerature back to 310K for Periodic_stimulation.
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Model of Human Jejunal Smooth Muscle Cell Electrophysiology |
| 2021-06-21 |
WeiweiAi |
Add comments for paramater difference from difference sources in default_values.cellml
Add T and Cao in the patch experiment to simulate fig 11;
Add T in the periodic stimulation experiment; Add fig 10 and 11;
Rerun the simulation and update the documentation.
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| 2021-06-09 |
WeiweiAi |
Update figure titles and documentation;
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Model of Human Jejunal Smooth Muscle Cell Electrophysiology |
| 2021-06-09 |
WeiweiAi |
Add Fig 9 and 13.
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| 2021-06-09 |
WeiweiAi |
Add SA experiment and more documentation, figures
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| 2021-06-08 |
WeiweiAi |
Add readme
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| 2021-06-08 |
WeiweiAi |
output norm to confirm the values
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| 2021-06-08 |
WeiweiAi |
Modify tau_dCaT to 1.9508 and the parameter in phi_s (0.05956) to 0.005956 (Eq S-24) based on the C code;
Add ICaL_channel_states_off and ICaL_off for Clamped_current_Xi to switch off the Cai dependency.
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| 2021-06-08 |
WeiweiAi |
Fixed the path errors /components..;
Modify the parameters to comply with the ones that the author provided C code (https://computationalbiolab.github.io/jejunal_smc_model/) used.
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| 2021-06-03 |
WeiweiAi |
Add python scripts for simulation
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| 2021-06-03 |
WeiweiAi |
Import Unit nM4
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| 2021-06-03 |
WeiweiAi |
Fixed the different reference T0 for ICaL and ICaT; Add python scripts for Fig8 simulation and plot. There is a big error in Cai which needs further investigation
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| 2021-06-02 |
WeiweiAi |
Move experiment parameters to *experiment.cellml;
Add intracellular concentrations to the outputs;
Add clamp protocol and experiments;
Add the figures in the paper and digitalized data (not complete yet).
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| 2021-06-02 |
WeiweiAi |
Add E_Nernst to instantiate Nernst potential for Ca, Na and K and modify relevant models to accommodate the change.
Add experiment of Periodic_stimulation, which can run.
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| 2021-06-01 |
WeiweiAi |
Add more components; Membrane_potential passed the validation with "[Warning] [128:38] Units validation results may be incorrect because the exponent is not a constant."
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| 2021-05-31 |
WeiweiAi |
Basic components
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