Workspaces
The list of model workspaces.
- RBS for PhzS
- RBS for spaK
- RBS for spaR
- RBS for TF Electroblu Device 2
- RBS for TF Electroblu Device 1
- Rectus Capitis Anterior
- Rectus Capitis Lateralis
- Rectus femoris
- Rectus femoris
- Reed, Nijhout, Sparks, Ulrich, 2004
- Reidl, Borowski, Sensse, Starke, Zapotocky, Eiswirth, 2006
- Renal Transport
- Reproducibility of the computational model of induced pluripotent stem-cell derived cardiomyocytes
- Reproducibility study of Computational modelling of glucose uptake by SGLT1 and GLUT2 in the enterocyte
- Respiratory System
- Revilla, Garcia-Ramos, 2003
- Riccobene, Omann, Linderman, 1999
- Rice, Jafri, Winslow, 2000
- Rice, Wang, Bers, Detombe, 2008
- Rice, Winslow, Hunter, 1999
- Rice, Winslow, Jafri, 1999
- Riemer, Sobie, Tung, 1998
- Rivlin, Saunders, 1951
- Rogers & McCulloch (1994)
- Rogers, Mcculloch, 1994
- Romond, Rustici, Gonze, Goldbeter, 1999
- Rong, Perelson 2009
- Roux, Noble, Noble, Marhl, 2006
- Rubin, Shevtsova, Ermentrout, Smith and Rybak 2009
- Ryanodine receptor knowledge page
- Sachse, Glanzel, Seemann, 2003
- Sachse, Moreno, Abildskov, 2008
- Saftenku, Williams, Sitsapesan, 2001
- Sakmann, Spindler, Bryant, Linz, Noble, 2000
- Salem, Saidel, Stanley, Cabrera, 2002
- Sampson-Iyer-Marks-Kass-2010
- Sarai, Matsuoka, Kuratomi, Ono, Noma, 2003
- Sarkar, Lauffenburger, 2003
- Sartorius
- Sartorius
- Saucerman, Bers, 2008
- Saucerman, Brunton, Michailova, Mcculloch, 2003
- Saucerman, Brunton, Michailova, Mcculloch, 2003
- Saucerman, Mcculloch, 2004
- Scalenus Anterior
- Scalenus Medius
- Scalenus Posterior
- SCAPHOID
- Schenzle 1994
- Schlosser, Selgrade, 2000
- Schmid, Nash, Young, Hunter, 2006
- Schneider, Shimayoshi, Amano, Matsuda, 2006
- Schoeberl, Eichler-Jonsson, Gilles, Muller, 2002
- Schuster, Beny, Meister, 2003
- SED-ML example
- Sedaghat, Sherman, Quon, 2002
- Seemann, Sachse, Weib, Dossel, 2003
- SEIR
- SEIR
- semantic-annotation
- semantic-annotation
- Semimembranosus
- Semitendinosus
- SERCA - The Physics of Physiology
- SERCA Higgins, 2006 Bond Graph (v2)
- SERCA protein knowledge page
- SERCA_ThreeState
- Session Resource Workspace
- SFong_saucerman2003_physiome
- SGLT1 - The Physics of Physiology
- Shannon, Wang, Puglisi, Weber, Bers, 2004
- Shaw, Chase, Starfinger, Smith, Hann, Desaive, Ghuysen, 2007
- Shaw, Rudy, 1997
- Shear-induced nitric oxide production by endothelial cells
- ShelleyCardiacAPModel
- Shi, Hose, 2009
- Shiferaw, Watanabe, Garfinkel, Weiss, Karma, 2003
- Shim 2006
- Shorten, Ocallaghan, Davidson, Soboleva, 2007
- Shorten, Robson, Mckinnon, Wall, 2000
- Shorten, Wall, 2000
- Shrestha, Hollot, Chipkin, Schmitt and Chait 2010
- Siebert, Rode, Herzog, Till and Blickhan, 2008
- Signalling Principled Model Example
- Simon-Chica et al. (2021) Novel insights into the electrophysiology of murine cardiac macrophages
- Simone_Trancuccio_2025
- Simple Growth Model
- Simple sine test model
- Simulation of the effects of extracellular calcium changes leads to a novel computational model of human ventricular action potential with a revised calcium handling
- Simulations of the effects of inositol 1,4,5=trisphosphate 3-kinase and S-phosphatase activities on Ca+ oscillations
- SimulationVuer
- Sine-Approximations
- Single PASMC model (Gosak et al 2014)
- Skouibine, Trayanova, Moore, 1999
- SLC transporters
- Smith Chase 2004
- Smith, 1980
- Smith, Abdala, Koizumi, Rybak and Paton 2007
- Smith, Crampin, 2004
- Smooth Muscle Cell Model
- Sneyd, Dufour, 2002
- Sneyd, Tsaneva-Atanasova, Yule, Thompson, Shuttleworth, 2004
- Sneyd, Tsanevaatanasova, Bruce, Straub, Giovannucci, Yule, 2003
- Sneyd_2016
- Snyder, Palmer, Moore, 2000
- Snyed, Wetton, Charles, Sanderson, 1995
- Sobie, Dilly, Dossantoscruz, Lederer, Jafri, 2002
- Soboleva, Vetharaniam, Nixon, Montenegro, Pearson, Sneyd, 2005
- Some "test" models
- Some test SED-ML to play with the nested proposal
- SPARC MIS Data Model
- Spine
- Spiro, Parkinson, Othmer, 1997
- Splenius Capitis
- Spronck, 2012
- Sriram, Bernot, Kepes, 2007
- Standard Virtual Parts Template Models v200906
- Starbuck, Wiley, Lauffenburger, 1990
- Steady state HMT
- Sten2020-Neurovascular Coupling Model
- Stern, Song, Sham, Yang, Boheler, Rios, 1999
- Sternocleidomastoid
- Sternohyoideus
- Sternothyroideus
- Stewart, Aslanidi, Noble, Noble, Boyett, Zhang, 2009
- Stewart, Aslanidi, Noble, Noble, Boyett, Zhang, 2009
- Sthilaire, Gronfier, Zeitzer, Klerman, 2007
- Stilianakis, Dietz, Schenzle, 1997
- Stomach Annotator for SPARC
- Strain channel - The Physics of Physiology
- Structural Test CellML 1.1 Models
- Stylohyoideus
- Subscapularis
- Sulman et al. 2008
- Supinator
- Supraspinatus
- Surkis, Peskin, Tranchina, Leonard, 1998
- Sveiczer, Csikasznagy, Gyorffy, Tyson, Novak, 2000
- SVP Template Library
- Swanson, True, Lin, Buhler, Vessella, Murray, 2001
- Swat, Kel and Herzel 2004
- Switching from Simple to Complex Oscillations in Calcium Signaling
- Synchronized Scene Viewer
- Tabak, Mascagni and Bertram 2010
- Tabak, Mascagni and Bertram 2010
- Tabak, Toporikova, Freeman, Bertram, 2007
- Takotsubo modelling, Land et al. 2014
- Temporalis Left
- Temporalis Right
- Tentusscher, Noble, Noble, Panfilov, 2004
- Tentusscher, Noble, Noble, Panfilov, 2004
- Tentusscher, Noble, Noble, Panfilov, 2006
- Tentusscher, Panfilov, 2006
- Tentusscher, Panfilov, 2006
- Teres major
- Teres minor
- Terkildsen, Niederer, Crampin, Hunter, Smith, 2008
- Terkildsen, Niederer, Crampin, Hunter, Smith, 2008
- Test
- Test ApiNATOMY to flatmap connectivity
- Test Area
- Test cellml model(s) for LibOmexMeta
- Test model for using data to control a variable value
- Testing plugin annotation
- Testing RDF linking across CellML, SED-ML, and SVG
- Teusink, Passarge, Reijenga, Esgalhado, Vanderweijden, Schepper, Walsh, Bakker, Vandam, Westerhoff, Snoep, 2000
- Tham 2008
- The biophysical basis of enterocyte homeostasis
- The cardiac Na+ /K+ ATPase: An updated, thermodynamically consistent model
- The cardiac Na+ /K+ ATPase: An updated, thermodynamically consistent model
- The cardiac Na+ /K+ ATPase: An updated, thermodynamically consistent model
- The Glucose-induced Switch Between Glycogen Phosphorylase and Glycogen Synthase in the Liver: Outlines of a Theoretical Approach
- The inflection point hypothesis: The relationship between the temperature dependence of enzyme catalyzed reaction rates and microbial growth rates
- The Physics of Physiology - Example 1: An electrical circuit
- The Physics of Physiology - Example 3: An electromechanical system
- The Physics of Physiology - Example 2: A mechanical system
- The Physics of Physiology - Example 5: A biochemical reaction with mixed stoichiometry
- The Physics of Physiology - Example 4: A simple biochemical reaction
- The Physics of Physiology - Example 8: Membrane ion channels
- The Physics of Physiology - Example 6: An enzyme-catalyzed reaction and Michaelis-Menten kinetics
- Thomas, 2000
- Thomas, 2000
- Thomsen, Neubig, 1989
- Thoracic spine
- Thoracic Vertebrae 1
- Thoracic Vertebrae 2
- Thoracic Vertebrae 3
- Thoracic Vertebrae 4
- Thoracic Vertebrae 5
- Thoracic Vertebrae 6
- Thoracic Vertebrae 7
- Thoracic Vertebrae 8
- Thoracic Vertebrae 9
- Thoracic Vertebrae 10
- Thoracic Vertebrae 11
- Thoracic Vertebrae 12
- Thyrohyoideus
- TIBIA
- Tolic, Mosekilde, Sturis, 2000
- Tomida, Hirose, Takizawa, Shibasaki, Iino, 2003
- Tong, Choi, Kharche, Holden, Zhang, Taggart, 2011
- Tong, Choi, Kharche, Holden, Zhang, Taggart, 2011 - Reduced Model
- Tong, Tribe, Smith, Taggart, 2014
- Tong_2011
- Tong_2011_V1
- Topp, Promislow, Devries, Miura, Finegood, 2000
- Toward a comprehensive cardiomyocyte model
- Tran 2010
- Tran 2017 - Cross-bridge model of shortening heat
- Tran, Smith, Loiselle, Crampin, 2009
- TranSERCA
- TRAPEZIUM
- Trapezius
- TRAPEZOID
- Triceps brachii
- Tutorial on Constructing a Systems Model from SVPs
- Two compartment model of diazepam biotransformation in an organotypical culture of primary human hepatocytes
- Tyson, 1991
- Tyson, Hong, Thron, Novak, 1999
- Ueda, Hagiwara, Kitano, 2001
- ULNA
- Uncertain starting point parabola
- Units
- units import test
- units_and_constants_for_BG
- Vanbeek, 2007
- Vancapelle, Durrer, 1980
- Vanderpol, Vandermark, 1928
- Vangoor, Lebeau, Krsmanovic, Sherman, Catt, Stojilkovic, 2000
- Varela - Canine Atrial Cell Models
- Vasalou and Henson 2010
- Vasalou and Henson 2010
- Vasalou and Henson 2010
- Vascular smooth muscle cell model from the Parthimos and Kapela articles
- Vaseghi, Baumeister, Rizzi, Reuss, 1999
- Vastus Intermedius
- Vastus lateralis
- Vastus medialis
- Vempati, Karagiannis, Popel, 2007
- Vendelin, Kongas, Saks, 2000
- Video to heart fitting
- Vilar 2006
- Vilar, Kueh, Barkai, Leibler, 2002
- Vinnakota, Kemp and Kushmerick, 2006
- Vinnakota, Rusk, Palmer, Shankland and Kushmerick, 2010
- Virtual Bacterial Photography
- Viswanathan, Shaw, Rudy, 1999
- viswanathan_shaw_rudy_1999
- VITAL 2.2 arterial wall growth knowledge page
- Voigt, Heijman et al. 2013 human atrial AP model
- Volume mesh of liver
- VPH-MIP case study on CellML
- Wanant, Quon, 2000
- Wang, Cirit and Haugh 2009
- Wang, Huang, Huang, 2006
- Wang, Li, Kuang, 2007
- Wang, Lin, Lin, Wu, 2008
- Wang, Sobie, 2008
- Wang, Sobie, 2008
- Warashina, Ogura, 2004
- Warren, Tawhai, Crampin, 2009
- Waugh, Sherratt, 2006
- Waugh, Sherratt, 2007
- Weak Acid Hydration
- Webb, Sherratt, Fish, 2002
- Wein, D'Amato, Perelson 1998
- Weinstein 2000
- Weinstein, 1995
- Weinstein, 1995
- Weinstein, 1998
- Westermark, Lansner, 2003
- Wierschem 2004
- Wilkins, Sneyd, 1998
- Winograd, Destexhe, Sanchezvives, 2008
- Winslow, Rice, Jafri, Marban, Ororke, 1999
- Wodarz, 2003
- Wodarz, Hamer, 2007
- Wodarz, Hamer, 2007
- Wodarz, Jansen, 2003
- Wodarz, Nowak, 1999
- Wodarz, Sierro, Klenerman, 2007
- Wolf, Heinrich, 2000
- Wolf, Passarge, Somsen, Snoep, Heinrich, Westerhoff, 2000
- Wolf, Sohn, Heinrich, Kuriyama, 2001
- Workflows for analysis of valvular and aortic disease
- Workspace Annotations
- Wu, Jeneson, Beard, 2006
- Wu, Jeneson, Beard, 2006
- Wu, Yang, Vinnakota, Beard, 2007
- Yamaguchi, Takaki, Matsubara, Yasuhara, Suga, 1996
- Yanagihara 1980
- Yang, Clark, Bryan and Robertson 2005
- Yang, Clark, Bryan, Robertson, 2003
- Yang, Tong, Mccarver, Hines, Beard, 2006
- Yasumura, Suga, 1988
- Yates, Stark, Klein, Antia, Callard, 2007
- Yi, Fogelson, Keener, Peskin, 2003
- Yoast_2020
- Youm, Kim, Han, Kim, Joo, Leem, Goto, Noma, Earm, 2006
- Zager, Schlosser, Tran, 2007
- Zeng, Laurita, Rosenbaum, Rudy, 1995
- Zhang, Holden, Kodama, Honjo, Lei, Varghese, Boyett, 2000
- Zinc/JSON resources